YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|200389628, gi...
Organism:	Salmonella enterica subsp. enterica serovar Virchow str. SL491
Length:	428 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|200389628, gi....

Description	E-value	Query Range	Subject Range
gi\|13359962, gi\|... - gi\|15829759\|ref\|NP_308532.1\| ammonium transporter [Escherichia coli O157:H7 str. Sakai], gi\|13359962... gi\|218703735, gi... - gi\|218703735\|ref\|YP_002411254.1\| ammonium transporter [Escherichia coli UMN026], gi\|218430832\|emb\|CA... gi\|217325321, gi... - gi\|217325321\|ref\|ZP_03441405.1\| ammonium transporter [Escherichia coli O157:H7 str. TW14588], gi\|217... gi\|218549881, gi... - gi\|218549881\|ref\|YP_002383672.1\| ammonium transporter [Escherichia fergusonii ATCC 35469], gi\|218357... gi\|218693914, gi... - gi\|218693914\|ref\|YP_002401581.1\| ammonium transporter [Escherichia coli 55989], gi\|218350646\|emb\|CAU... gi\|218698637, gi... - gi\|218698637\|ref\|YP_002406266.1\| ammonium transporter [Escherichia coli IAI39], gi\|218368623\|emb\|CAR... gi\|208816378, gi... - gi\|208816378\|ref\|ZP_03257557.1\| ammonium transporter [Escherichia coli O157:H7 str. EC4045], gi\|2087... gi\|208737018, gi... - gi\|208822825\|ref\|ZP_03263143.1\| ammonium transporter [Escherichia coli O157:H7 str. EC4042], gi\|2087... gi\|209161110, gi... - gi\|209399710\|ref\|YP_002269101.1\| ammonium transporter [Escherichia coli O157:H7 str. EC4115], gi\|209... gi\|209910927, gi... - gi\|209917668\|ref\|YP_002291752.1\| ammonium transporter [Escherichia coli SE11], gi\|209910927\|dbj\|BAG7... gi\|15800181, gi\|... - gi\|15800181\|ref\|NP_286193.1\| ammonium transporter [Escherichia coli O157:H7 EDL933], gi\|12513316\|gb\|... gi\|73854508, gi\|... - gi\|74311031\|ref\|YP_309450.1\| ammonium transporter [Shigella sonnei Ss046], gi\|73854508\|gb\|AAZ87215.1... gi\|1103924, gi\|8... - gi\|89107321\|ref\|AP_001101.1\| ammonium transporter [Escherichia coli str. K-12 substr. W3110], gi\|856... gi\|157065658, gi... - gi\|157159978\|ref\|YP_001457296.1\| ammonium transporter [Escherichia coli HS], gi\|157065658\|gb\|ABV0491... EG11821 - ammonium transporter / Ammonia gas channel; sequesters GlnK, a negative regulator of AmtB activity, ... gi\|168747872, gi... - gi\|188017627\|gb\|EDU55749.1\| ammonium transporter [Escherichia coli O157:H7 str. EC4113], gi\|16874787... gi\|168754557, gi... - gi\|189357964\|gb\|EDU76383.1\| ammonium transporter [Escherichia coli O157:H7 str. EC4401], gi\|16875455... gi\|254591035, gi... - gi\|254791635\|ref\|YP_003076472.1\| ammonium transporter [Escherichia coli O157:H7 str. TW14359], gi\|25... gi\|238859985, gi... - gi\|238899739\|ref\|YP_002925535.1\| ammonium transporter [Escherichia coli BW2952], gi\|238859985\|gb\|ACR... EG11821 - ammonium transporter / Ammonia gas channel; sequesters GlnK, a negative regulator of AmtB activity, ... AMTB_ECO57 - Ammonia channel OS=Escherichia coli O157:H7 GN=amtB PE=1 SV=1 gi\|192959054, gi... - gi\|193067642\|ref\|ZP_03048609.1\| ammonium transporter [Escherichia coli E110019], gi\|192959054\|gb\|EDV... gi\|194428981, gi... - gi\|194428981\|ref\|ZP_03061513.1\| ammonium transporter [Escherichia coli B171], gi\|194412918\|gb\|EDX292... gi\|195936015 - gi\|195936015\|ref\|ZP_03081397.1\| ammonium transporter [Escherichia coli O157:H7 str. EC4024] gi\|208728247, gi... - gi\|208808446\|ref\|ZP_03250783.1\| ammonium transporter [Escherichia coli O157:H7 str. EC4206], gi\|2087... gi\|170680701, gi... - gi\|170680701\|ref\|YP_001742596.1\| ammonium transporter [Escherichia coli SMS-3-5], gi\|170518419\|gb\|AC... AMTB_ECOLI - Ammonia channel precursor (Ammonia transporter) - Escherichia coli gi\|188492939, gi... - gi\|188492939\|ref\|ZP_03000209.1\| ammonium transporter [Escherichia coli 53638], gi\|188488138\|gb\|EDU63... gi\|190901690, gi... - gi\|191168230\|ref\|ZP_03030024.1\| ammonium transporter [Escherichia coli B7A], gi\|190901690\|gb\|EDV6144... gi\|192929159, gi... - gi\|193064130\|ref\|ZP_03045214.1\| ammonium transporter [Escherichia coli E22], gi\|192929159\|gb\|EDV8276... gi\|168786303, gi... - gi\|189373715\|gb\|EDU92131.1\| ammonium transporter [Escherichia coli O157:H7 str. EC869], gi\|168786303... gi\|124530297, gi... - gi\|124530297\|ref\|ZP_01701016.1\| ammonium transporter [Escherichia coli B], gi\|124499322\|gb\|EAY46813.... gi\|189379239, gi... - gi\|189379239\|gb\|EDU97655.1\| ammonium transporter [Escherichia coli O157:H7 str. EC508], gi\|168798016... gi\|170021160, gi... - gi\|170021160\|ref\|YP_001726114.1\| ammonium transporter [Escherichia coli ATCC 8739], gi\|169756088\|gb\|... gi\|169887872, gi... - gi\|170080037\|ref\|YP_001729357.1\| ammonium transporter [Escherichia coli str. K-12 substr. DH10B], gi... gi\|189369142, gi... - gi\|189369142\|gb\|EDU87558.1\| ammonium transporter [Escherichia coli O157:H7 str. EC4501], gi\|16876039... gi\|168768407, gi... - gi\|189362507\|gb\|EDU80926.1\| ammonium transporter [Escherichia coli O157:H7 str. EC4486], gi\|16876840... gi\|187767539, gi... - gi\|187767539\|gb\|EDU31383.1\| ammonium transporter [Escherichia coli O157:H7 str. EC4196], gi\|16877714... gi\|168778945, gi... - gi\|189002794\|gb\|EDU71780.1\| ammonium transporter [Escherichia coli O157:H7 str. EC4076], gi\|16877894...	0.0	[1..428]	[1..428]
gi\|110804479, gi... - gi\|110804479\|ref\|YP_687999.1\| ammonium transporter [Shigella flexneri 5 str. 8401], gi\|110614027\|gb\|... gi\|24111835, gi\|... - gi\|24111835\|ref\|NP_706345.1\| ammonium transporter [Shigella flexneri 2a str. 301], gi\|24050627\|gb\|AA... gi\|30040196, gi\|... - gi\|30061952\|ref\|NP_836123.1\| ammonium transporter [Shigella flexneri 2a str. 2457T], gi\|30040196\|gb\|...	0.0	[1..428]	[1..428]
gi\|91209525, gi\|... - gi\|91209525\|ref\|YP_539511.1\| ammonium transporter [Escherichia coli UTI89], gi\|91071099\|gb\|ABE05980.... gi\|218557361, gi... - gi\|218557361\|ref\|YP_002390274.1\| ammonium transporter [Escherichia coli S88], gi\|218364130\|emb\|CAR01... gi\|237707553, gi... - gi\|237707553\|ref\|ZP_04538034.1\| ammonium transporter [Escherichia sp. 3_2_53FAA], gi\|226898763\|gb\|EE... gi\|115511835, gi... - gi\|117622711\|ref\|YP_851624.1\| ammonium transporter [Escherichia coli APEC O1], gi\|115511835\|gb\|ABI99...	0.0	[1..428]	[1..428]
gi\|82542940, gi\|... - gi\|82542940\|ref\|YP_406887.1\| ammonium transporter [Shigella boydii Sb227], gi\|81244351\|gb\|ABB65059.1... gi\|187732151, gi... - gi\|187732151\|ref\|YP_001879163.1\| ammonium transporter [Shigella boydii CDC 3083-94], gi\|187429143\|gb...	0.0	[1..428]	[1..428]
gi\|110640712, gi... - gi\|110640712\|ref\|YP_668440.1\| ammonium transporter [Escherichia coli 536], gi\|110342304\|gb\|ABG68541....	0.0	[1..428]	[1..428]
gi\|191173692, gi... - gi\|191173692\|ref\|ZP_03035216.1\| ammonium transporter [Escherichia coli F11], gi\|190906050\|gb\|EDV6566... gi\|26246465, gi\|... - gi\|26246465\|ref\|NP_752504.1\| ammonium transporter [Escherichia coli CFT073], gi\|26106863\|gb\|AAN79048... gi\|227838623, gi... - gi\|227884537\|ref\|ZP_04002342.1\| ammonium transporter [Escherichia coli 83972], gi\|227838623\|gb\|EEJ49...	0.0	[1..428]	[1..428]
gi\|197094778, gi... - gi\|197363301\|ref\|YP_002142938.1\| ammonium transporter [Salmonella enterica subsp. enterica serovar P... gi\|56414381, gi\|... - gi\|56414381\|ref\|YP_151456.1\| ammonium transporter [Salmonella enterica subsp. enterica serovar Parat...	0.0	[1..428]	[1..428]
gi\|87289302, gi\|... - gi\|87308220\|ref\|ZP_01090362.1\| ammonium/methylammonium permease [Blastopirellula marina DSM 3645], g...	0.0	[29..422]	[7..399]
gi\|82775743, gi\|... - gi\|82775743\|ref\|YP_402090.1\| ammonium transporter [Shigella dysenteriae Sd197], gi\|81239891\|gb\|ABB60...	0.0	[1..428]	[1..428]
gi\|66847348, gi\|... - gi\|70989735\|ref\|XP_749717.1\| ammonium transporter MeaA [Aspergillus fumigatus Af293], gi\|66847348\|gb...	0.0	[20..427]	[40..460]

Back

Predicted Domain #1

Region A:
Residues: [1-428]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKIAMIKTTL ASLALLPGLT IAAPAVADKA DSAFMMICTA LVLFMTIPGI ALFYGGLIRA  60
   61 KNVLSMLTQV TVTFALVCIL WVVYGYSLAF GEGNHFFGNA DGAMLKNIAL TAVTGTIYQY 120
  121 IHVAFQGSFA CITVGLIVGA LAERIRFSAV LIFVVVWFTL SYIPIAHMVW GGGLLAAHGA 180
  181 LDFAGGTVVH INAAIAGLVG AYLIGKRVGF GKEAFKPHNL PMVFTGTAIL YIGWFGFNAG 240
  241 SAGSANEIAA LAFVNTVVAT AAAILGWIIG EWTLRGKPSL LGACSGAIAG LVGVTPACGY 300
  301 VGVGGALVIG VIAGLAGLWG VTMLKRLLRV DDPCDVFGVH GVCGIVGCIL TGVFAASSLG 360
  361 GVGFVDGVTM GHQVMVQLES IAITVVWSGV VAFVGYKLAD ILVGLRVPEE QEREGLDVNS 420
  421 HGENAYNA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	110.0
Match:	2ns1A
Description:	No description for 2ns1A was found.

Predicted functions:

Term	Confidence	Notes
ammonium transmembrane transporter activity	10.0624820335928	bayes_pls_golite062009
organic cation transmembrane transporter activity	9.07420898067257	bayes_pls_golite062009
cation transmembrane transporter activity	7.57181833547312	bayes_pls_golite062009
ion transmembrane transporter activity	7.46308808953548	bayes_pls_golite062009
inorganic cation transmembrane transporter activity	7.08971867997216	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	7.03159982829686	bayes_pls_golite062009
transporter activity	5.3870893301235	bayes_pls_golite062009
transmembrane transporter activity	5.3046132351753	bayes_pls_golite062009
substrate-specific transporter activity	5.16067985999244	bayes_pls_golite062009
methylammonium transmembrane transporter activity	4.23822940190415	bayes_pls_golite062009
active transmembrane transporter activity	1.08017669832334	bayes_pls_golite062009
high affinity secondary active ammonium transmembrane transporter activity	0.499461838170411	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: