YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|190406223
Organism:	Saccharomyces cerevisiae RM11-1a
Length:	513 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|190406223.

Description	E-value	Query Range	Subject Range
gi\|190406223 - gi\|190406223\|gb\|EDV09490.1\| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a] YIL001W - Putative protein of unknown function; contains a BTB/POZ domain which generally function in protein ... YIA1_YEAST - Ankyrin repeat-containing protein YIL001W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) G...	5.0E-89	[1..513]	[1..513]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	2.0E-73	[13..512]	[6..477]
ABTB1_MOUSE - Ankyrin repeat and BTB/POZ domain-containing protein 1 OS=Mus musculus GN=Abtb1 PE=2 SV=1	6.0E-72	[13..512]	[6..477]
BTB3_SCHPO - BTB/POZ domain-containing protein 3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=btb3 P... btb3 - BTB /POZ domain protein Btb3	5.0E-71	[13..511]	[56..521]
gi\|119599741, gi... - gi\|25777626\|ref\|NP_742025.1\| ankyrin repeat and BTB (POZ) domain containing 1 isoform 3 [Homo sapien...	8.0E-64	[47..512]	[16..452]
KLHDB_DROYA - Kelch-like protein diablo OS=Drosophila yakuba GN=dbo PE=3 SV=1 KLHDB_DROSE - Kelch-like protein diablo OS=Drosophila sechellia GN=dbo PE=3 SV=1 dbo-PA - The gene diablo is referred to in FlyBase by the symbol Dmel\dbo (CG6224, FBgn0040230). It is a prot...	8.0E-57	[252..494]	[50..272]

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Predicted Domain #1

Region A:
Residues: [1-94]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADKLMDKNF EELCYSCRTG DMDNVDRLIS TGVNVNSVDK FDNSPLFLAS LCGHEAVVKL  60
   61 LLQRGAVCDR DRYEGARCIY GALTDTIRDT LLSY

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	39.519517
Match:	1myo__
Description:	Myotrophin
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [95-217]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DISKAVDVKQ PFATHISSMY NDEGFLKRDI TFRVSNGKLF TAHKFLLCAR SEILAEKMVN  60
   61 EWAKHEIVSL EVRPDIFDIF LKFLYLIPIL HQIEPGQYEE LIELSSKFDI ELLPEFLDKA 120
  121 RHT

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [218-391]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ADPTEKSRLM SDYQYKFTEV ARSQLLIFVN NCIFRSTVDL ANSERRVFSL MNCPAYPDVQ  60
   61 LMVKNRNGAI RIYPCHLAVL SRAEYFKVMF TNNFKEKVTY IKAKHVTGKY NSIIPQLTLP 120
  121 NCEFEVAEII LRYLYADNTD IPWMYAVDVL LLADILLEDR LKTIASTIIT QSKE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	5.69897
Match:	1buoA_
Description:	Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain
Matching Structure (courtesy of the PDB):

Predicted Domain #4

Region A:
Residues: [392-513]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FIQQYNVFDV LYLSWEIGVE RLEQFAAKFI AIHLQELYKD PEIKRAIMLS SQRISLRQET  60
   61 DTIELVDDIR YYLLRKYSFE PDDVELFENQ DDLEYLKQVG YLEYRKDMGM LDNILADLEL 120
  121 DV

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits