YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|207343504
Organism:	Saccharomyces cerevisiae AWRI1631
Length:	441 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|207343504.

Description	E-value	Query Range	Subject Range
gi\|151941487 - gi\|151941487\|gb\|EDN59850.1\| mutant pcf11 extragenic suppressor [Saccharomyces cerevisiae YJM789] MPE1 - Essential conserved subunit of CPF (cleavage and polyadenylation factor), plays a role in 3' end for... gi\|207343504 - gi\|207343504\|gb\|EDZ70948.1\| YKL059Cp-like protein [Saccharomyces cerevisiae AWRI1631] gi\|190409770 - gi\|190409770\|gb\|EDV13035.1\| protein MPE1 [Saccharomyces cerevisiae RM11-1a] MPE1_YEAST - Protein MPE1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MPE1 PE=1 SV=1	0.0	[1..441]	[1..441]
gi\|15238091 - gi\|15238091\|ref\|NP_199554.1\| unknown protein [Arabidopsis thaliana]	9.0E-86	[5..432]	[3..438]
YORF_SCHPO - Uncharacterized RING finger protein P8B7.15c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) ... SPBP8B7.15c - ubiquitin-protein ligase E3 RBBP6 family	2.0E-76	[1..419]	[1..416]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	3.0E-71	[3..435]	[2..453]
gi\|18845848 - gi\|18845848\|gb\|AAL18101.1\| recombination activating protein 1 [Chloropsis cochinchinensis]	3.0E-56	[128..383]	[100..353]
gi\|18845874 - gi\|18845874\|gb\|AAL18114.1\| recombination activating protein 1 [Hirundo pyrrhonota] gi\|18845874 - gi\|18845874\|gb\|AAL18114.1\| recombination activating protein 1 [Hirundo pyrrhonota]	3.0E-56	[128..383]	[100..353]

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Predicted Domain #1

Region A:
Residues: [1-69]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSTIFYRFK SQRNTSRILF DGTGLTVFDL KREIIQENKL GDGTDFQLKI YNPDTEEEYD  60
   61 DDAFVIPRS

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [70-268]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TSVIVKRSPA IKSFSVHSRL KGNVGAAALG NATRYVTGRP RVLQKRQHTA TTTANVSGTT  60
   61 EEERIASMFA TQENQWEQTQ EEMSAATPVF FKSQTNKNSA QENEGPPPPG YMCYRCGGRD 120
  121 HWIKNCPTNS DPNFEGKRIR RTTGIPKKFL KSIEIDPETM TPEEMAQRKI MITDEGKFVV 180
  181 QVEDKQSWED YQRKRENRQ

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [269-441]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IDGDETIWRK GHFKDLPDDL KCPLTGGLLR QPVKTSKCCN IDFSKEALEN ALVESDFVCP  60
   61 NCETRDILLD SLVPDQDKEK EVETFLKKQE ELHGSSKDGN QPETKKMKLM DPTGTAGLNN 120
  121 NTSLPTSVNN GGTPVPPVPL PFGIPPFPMF PMPFMPPTAT ITNPHQADAS PKK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	18.221849
Match:	1rmd__
Description:	V(D)J recombination activating protein 1 (RAG1), dimerization domain
Matching Structure (courtesy of the PDB):

Predicted Domain #4

Region A:
Residues: [227-441]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ETMTPEEMAQ RKIMITDEGK FVVQVEDKQS WEDYQRKREN RQIDGDETIW RKGHFKDLPD  60
   61 DLKCPLTGGL LRQPVKTSKC CNIDFSKEAL ENALVESDFV CPNCETRDIL LDSLVPDQDK 120
  121 EKEVETFLKK QEELHGSSKD GNQPETKKMK LMDPTGTAGL NNNTSLPTSV NNGGTPVPPV 180
  181 PLPFGIPPFP MFPMPFMPPT ATITNPHQAD ASPKK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	20.0
Match:	2cklB
Description:	No description for 2cklB was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits