YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|213424437
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. E02-1180
Length:	206 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|213424437.

Description	E-value	Query Range	Subject Range
gi\|81240772, gi\|... - gi\|82776624\|ref\|YP_402973.1\| hypothetical protein SDY_1335 [Shigella dysenteriae Sd197], gi\|81240772...	5.0E-72	[1..206]	[13..218]
gi\|110805270, gi... - gi\|110805270\|ref\|YP_688790.1\| hypothetical protein SFV_1280 [Shigella flexneri 5 str. 8401], gi\|1106... gi\|13361304 - gi\|13361304\|dbj\|BAB35262.1\| hypothetical protein [Escherichia coli O157:H7] gi\|209772040, gi... - pir\|\|F64874 probable translation factor yciO - Escherichia coli (strain K-12), pir\|\|H85760 probable... gi\|26247596, gi\|... - gi\|26247596\|ref\|NP_753636.1\| hypothetical protein c1732 [Escherichia coli CFT073], gi\|26107998\|gb\|AA... gi\|24112666, gi\|... - gi\|24112666\|ref\|NP_707176.1\| hypothetical protein SF1270 [Shigella flexneri 2a str. 301], gi\|2405158... gi\|49176093, gi\|... - gi\|49176093\|ref\|NP_415783.3\| hypothetical protein b1267 [Escherichia coli K12], gb\|AAC74349.1\| orf, ... gi\|13361304, gi\|... - gi\|162139712\|ref\|NP_309866.3\| hypothetical protein ECs1839 [Escherichia coli O157:H7 str. Sakai], gi... gi\|30062790, gi\|... - gi\|30062790\|ref\|NP_836961.1\| hypothetical protein S1355 [Shigella flexneri 2a str. 2457T], gi\|300410... gi\|91210558, gi\|... - gi\|91210558\|ref\|YP_540544.1\| hypothetical protein UTI89_C1535 [Escherichia coli UTI89], gi\|91072132\|... gi\|208739585, gi... - gi\|208819462\|ref\|ZP_03259782.1\| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str. EC... gi\|12515530, gi\|... - gi\|15801912\|ref\|NP_287932.1\| hypothetical protein Z2543 [Escherichia coli O157:H7 EDL933], gi\|125155... gi\|209162354, gi... - gi\|209400954\|ref\|YP_002270321.1\| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str. E... gi\|81245690, gi\|... - gi\|82544279\|ref\|YP_408226.1\| hypothetical protein SBO_1799 [Shigella boydii Sb227], gi\|81245690\|gb\|A... gi\|217317563, gi... - gi\|217329124\|ref\|ZP_03445204.1\| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str. TW... gi\|194415876, gi... - gi\|194425821\|ref\|ZP_03058377.1\| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli B171], gi\|19441... gi\|194423934, gi... - gi\|194436951\|ref\|ZP_03069050.1\| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli 101-1], gi\|1944... gi\|208810838, gi... - gi\|208810838\|ref\|ZP_03252671.1\| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str. EC... gi\|208732167, gi... - gi\|208815519\|ref\|ZP_03256698.1\| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str. EC... gi\|73855840, gi\|... - gi\|74312363\|ref\|YP_310782.1\| hypothetical protein SSON_1876 [Shigella sonnei Ss046], gi\|73855840\|gb\|... gi\|227836509, gi... - gi\|227886305\|ref\|ZP_04004110.1\| RNA binding protein [Escherichia coli 83972], gi\|227836509\|gb\|EEJ469... gi\|226900047, gi... - gi\|237705290\|ref\|ZP_04535771.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22690... gi\|189370440, gi... - gi\|189405385\|ref\|ZP_02815073.2\| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str. EC... gi\|189406137, gi... - gi\|189406137\|ref\|ZP_02826620.2\| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str. EC... gi\|191171102, gi... - gi\|191171102\|ref\|ZP_03032653.1\| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli F11], gi\|190908... gi\|193062588, gi... - gi\|193062588\|ref\|ZP_03043682.1\| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli E22], gi\|192931... gi\|188025120, gi... - gi\|188025120\|ref\|ZP_02776177.2\| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str. EC... gi\|189010692, gi... - gi\|189010692\|ref\|ZP_02808776.2\| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str. EC... gi\|189359972, gi... - gi\|189403568\|ref\|ZP_02796272.2\| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str. EC... gi\|189366283, gi... - gi\|189404340\|ref\|ZP_02788593.2\| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str. EC... gi\|117623527, gi... - gi\|117623527\|ref\|YP_852440.1\| hypothetical protein APECO1_427 [Escherichia coli APEC O1], gi\|1155126... gi\|170519528, gi... - gi\|170681810\|ref\|YP_001743920.1\| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli SMS-3-5], gi\|1... gi\|187776059, gi... - gi\|187776059\|ref\|ZP_02800082.2\| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str. EC...	2.0E-71	[1..206]	[13..218]
EG12967 - putative RNA binding protein / Predicted RNA binding protein; low abundance protein YCIO_ECOL6 - Uncharacterized protein YciO OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=yciO ... EG12967 - putative RNA binding protein / Predicted RNA binding protein; low abundance protein YCIO_ECOLI - Protein yciO - Escherichia coli gi\|169755297, gi... - gi\|170020369\|ref\|YP_001725323.1\| hypothetical protein EcolC_2361 [Escherichia coli ATCC 8739], gi\|16... gi\|168758351, gi... - gi\|189354813\|gb\|EDU73232.1\| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str. EC4401... gi\|194416711, gi... - gi\|194435054\|ref\|ZP_03067293.1\| Sua5/YciO/YrdC/YwlC family protein [Shigella dysenteriae 1012], gi\|1... gi\|170080944, gi... - gi\|170080944\|ref\|YP_001730264.1\| hypothetical protein ECDH10B_1382 [Escherichia coli str. K-12 subst... gi\|75259378 - gi\|75259378\|ref\|ZP_00730697.1\| COG0009: Putative translation factor (SUA5) [Escherichia coli E22] gi\|124500586, gi... - gi\|124528354\|ref\|ZP_01699664.1\| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli B], gi\|12450058... gi\|188495376, gi... - gi\|75515121\|ref\|ZP_00737325.1\| COG0009: Putative translation factor (SUA5) [Escherichia coli 53638],... YCIO_SHIFL - Uncharacterized protein YciO OS=Shigella flexneri GN=yciO PE=3 SV=1 gi\|85674890, gi\|... - gi\|89108113\|ref\|AP_001893.1\| hypothetical protein [Escherichia coli str. K-12 substr. W3110], gi\|856... gi\|38703956 - gi\|38703956\|ref\|NP_309866.2\| hypothetical protein ECs1839 [Escherichia coli O157:H7] YCIO_ECOL6 - Uncharacterized protein yciO OS=Escherichia coli O6 GN=yciO PE=3 SV=1 gi\|38703956 - gi\|38703956\|ref\|NP_309866.2\| hypothetical protein ECs1839 [Escherichia coli O157:H7 str. Sakai] gi\|83587404 - gi\|83587404\|ref\|ZP_00926032.1\| COG0009: Putative translation factor (SUA5) [Escherichia coli 101-1] gi\|218704790, gi... - gi\|218704790\|ref\|YP_002412309.1\| hypothetical protein ECUMN_1565 [Escherichia coli UMN026], gi\|21843... gi\|75179089, gi\|... - gi\|75179089\|ref\|ZP_00699107.1\| COG0009: Putative translation factor (SUA5) [Shigella boydii BS512], ... gi\|218369960, gi... - gi\|218699974\|ref\|YP_002407603.1\| hypothetical protein ECIAI39_1603 [Escherichia coli IAI39], gi\|2183... gi\|157155810, gi... - gi\|75190352\|ref\|ZP_00703619.1\| COG0009: Putative translation factor (SUA5) [Escherichia coli E24377A... gi\|157160772, gi... - gi\|75195415\|ref\|ZP_00705485.1\| COG0009: Putative translation factor (SUA5) [Escherichia coli HS], gi... gi\|75212705 - gi\|75212705\|ref\|ZP_00712703.1\| COG0009: Putative translation factor (SUA5) [Escherichia coli B171] gi\|110641496, gi... - gi\|110641496\|ref\|YP_669226.1\| hypothetical protein ECP_1314 [Escherichia coli 536], gi\|110343088\|gb\|... gi\|75230176, gi\|... - gi\|75230176\|ref\|ZP_00716677.1\| COG0009: Putative translation factor (SUA5) [Escherichia coli B7A], g... gi\|75235226, gi\|... - gi\|75235226\|ref\|ZP_00719463.1\| COG0009: Putative translation factor (SUA5) [Escherichia coli E110019... gi\|75242066 - gi\|75242066\|ref\|ZP_00725860.1\| COG0009: Putative translation factor (SUA5) [Escherichia coli F11] gi\|209918507, gi... - gi\|209918507\|ref\|YP_002292591.1\| hypothetical protein ECSE_1316 [Escherichia coli SE11], gi\|20991176... gi\|195939200 - gi\|195939200\|ref\|ZP_03084582.1\| hypothetical protein EscherichcoliO157_22736 [Escherichia coli O157:... gi\|218356583, gi... - gi\|218549042\|ref\|YP_002382833.1\| hypothetical protein EFER_1690 [Escherichia fergusonii ATCC 35469],... gi\|215264634, gi... - gi\|215486562\|ref\|YP_002328993.1\| hypothetical protein E2348C_1457 [Escherichia coli O127:H6 str. E23... gi\|218558252, gi... - gi\|218558252\|ref\|YP_002391165.1\| hypothetical protein ECS88_1401 [Escherichia coli S88], gi\|21836502... gi\|218360587, gi... - gi\|218553819\|ref\|YP_002386732.1\| hypothetical protein ECIAI1_1286 [Escherichia coli IAI1], gi\|218360... gi\|218694838, gi... - gi\|218694838\|ref\|YP_002402505.1\| hypothetical protein EC55989_1424 [Escherichia coli 55989], gi\|2183... gi\|218426821, gi... - gi\|218689257\|ref\|YP_002397469.1\| hypothetical protein ECED1_1473 [Escherichia coli ED1a], gi\|2184268... gi\|238900500, gi... - gi\|238900500\|ref\|YP_002926296.1\| hypothetical protein BWG_1096 [Escherichia coli BW2952], gi\|2388604... gi\|242377044, gi... - gi\|251784771\|ref\|YP_002999075.1\| hypothetical protein B21_01251 [Escherichia coli BL21], gi\|24237704... gi\|253773736, gi... - gi\|254288154\|ref\|YP_003053902.1\| hypothetical protein ECD_01241 [Escherichia coli BL21(DE3)], gi\|253... gi\|253973247, gi... - gi\|254161346\|ref\|YP_003044454.1\| hypothetical protein ECB_01241 [Escherichia coli B str. REL606], gi... gi\|254792855, gi... - gi\|254792855\|ref\|YP_003077692.1\| predicted RNA-binding protein [Escherichia coli O157:H7 str. TW1435...	2.0E-71	[1..206]	[1..206]
gi\|89105019, gi\|... - gi\|89105019\|ref\|ZP_01177547.1\| COG0009: Putative translation factor (SUA5) [Yersinia pestis biovar O... gi\|108807565, gi... - gi\|108807565\|ref\|YP_651481.1\| hypothetical protein YPA_1570 [Yersinia pestis Antiqua], gi\|108779478\|... gi\|229902143, gi... - gi\|229902143\|ref\|ZP_04517264.1\| predicted RNA-binding protein [Yersinia pestis Nepal516], gi\|2296810... Q66AJ6\|Q66AJ6_YERPS - Putative uncharacterized protein - Yersinia pseudotuberculosis gi\|186895509, gi... - gi\|186895509\|ref\|YP_001872621.1\| hypothetical protein YPTS_2203 [Yersinia pseudotuberculosis PB1/+],... gi\|169750809, gi... - gi\|170024275\|ref\|YP_001720780.1\| hypothetical protein YPK_2040 [Yersinia pseudotuberculosis YPIII], ... gi\|229894896, gi... - gi\|229894896\|ref\|ZP_04510074.1\| predicted RNA-binding protein [Yersinia pestis Pestoides A], gi\|2297... gi\|22125943, gi\|... - gi\|22125943\|ref\|NP_669366.1\| hypothetical protein y2053 [Yersinia pestis KIM], gi\|21958883\|gb\|AAM856... gi\|229693976, gi... - gi\|229897639\|ref\|ZP_04512795.1\| predicted RNA-binding protein [Yersinia pestis biovar Orientalis str... gi\|25319038 - pir\|\|AF0269 conserved hypothetical protein YPO2212 [imported] - Yersinia pestis (strain CO92) gi\|229688574, gi... - gi\|229898284\|ref\|ZP_04513431.1\| predicted RNA-binding protein [Yersinia pestis biovar Orientalis str... gi\|51596460, gi\|... - gi\|51596460\|ref\|YP_070651.1\| hypothetical protein YPTB2134 [Yersinia pseudotuberculosis IP 32953], g... gi\|153949288, gi... - gi\|77629211\|ref\|ZP_00791797.1\| COG0009: Putative translation factor (SUA5) [Yersinia pseudotuberculo... gi\|165927411, gi... - gi\|165927411\|ref\|ZP_02223243.1\| Sua5/YciO/YrdC/YwlC family protein [Yersinia pestis biovar Orientali... gi\|45436671, gi\|... - gi\|45441809\|ref\|NP_993348.1\| hypothetical protein YP_2009 [Yersinia pestis biovar Microtus str. 9100... gi\|149365869, gi... - gi\|149365869\|ref\|ZP_01887904.1\| hypothetical protein YPE_1047 [Yersinia pestis CA88-4125], gi\|149292... gi\|166210525, gi... - gi\|166210525\|ref\|ZP_02236560.1\| Sua5/YciO/YrdC/YwlC family protein [Yersinia pestis biovar Antiqua s... gi\|115347919, gi... - gi\|218929308\|ref\|YP_002347183.1\| hypothetical protein YPO2212 [Yersinia pestis CO92], gi\|16122440\|re... gi\|145209916, gi... - gi\|145598220\|ref\|YP_001162296.1\| hypothetical protein YPDSF_0923 [Yersinia pestis Pestoides F], gi\|1... gi\|165990465, gi... - gi\|166010763\|ref\|ZP_02231661.1\| Sua5/YciO/YrdC/YwlC family protein [Yersinia pestis biovar Antiqua s... gi\|167420278, gi... - gi\|167420278\|ref\|ZP_02312031.1\| Sua5/YciO/YrdC/YwlC family protein [Yersinia pestis biovar Orientali... gi\|167049698, gi... - gi\|167400845\|ref\|ZP_02306351.1\| Sua5/YciO/YrdC/YwlC family protein [Yersinia pestis biovar Antiqua s... gi\|167470516 - gi\|167470516\|ref\|ZP_02335220.1\| Sua5/YciO/YrdC/YwlC family protein [Yersinia pestis FV-1] gi\|167056233, gi... - gi\|167425046\|ref\|ZP_02316799.1\| Sua5/YciO/YrdC/YwlC family protein [Yersinia pestis biovar Mediaeval...	1.0E-70	[1..205]	[1..205]
gi\|62180287, gi\|... - gi\|62180287\|ref\|YP_216704.1\| hypothetical protein SC1717 [Salmonella enterica subsp. enterica serova...	3.0E-70	[1..205]	[1..205]
gi\|36785780, gi\|... - gi\|37526349\|ref\|NP_929693.1\| hypothetical protein plu2456 [Photorhabdus luminescens subsp. laumondii...	3.0E-70	[1..206]	[1..206]
gi\|238723332, gi... - gi\|77972652\|ref\|ZP_00828212.1\| COG0009: Putative translation factor (SUA5) [Yersinia frederiksenii A...	1.0E-69	[1..205]	[1..205]
gi\|77977443, gi\|... - gi\|77977443\|ref\|ZP_00832891.1\| COG0009: Putative translation factor (SUA5) [Yersinia intermedia ATCC...	1.0E-69	[1..205]	[1..205]
gi\|77961368 - gi\|77961368\|ref\|ZP_00825207.1\| COG0009: Putative translation factor (SUA5) [Yersinia mollaretii ATCC...	2.0E-69	[1..205]	[1..205]
gi\|254848304, gi... - gi\|75829485\|ref\|ZP_00758786.1\| COG0009: Putative translation factor (SUA5) [Vibrio cholerae MO10], g... gi\|153819097, gi... - gi\|153819097\|ref\|ZP_01971764.1\| conserved hypothetical protein [Vibrio cholerae NCTC 8457], gi\|12651... gi\|225354625, gi... - gi\|75819795\|ref\|ZP_00749860.1\| COG0009: Putative translation factor (SUA5) [Vibrio cholerae V51], gi... gi\|229511102, gi... - gi\|229511102\|ref\|ZP_04400581.1\| hypothetical protein VCE_002509 [Vibrio cholerae B33], gi\|229351067\|... gi\|121728251, gi... - gi\|75816076\|ref\|ZP_00746558.1\| COG0009: Putative translation factor (SUA5) [Vibrio cholerae V52], gi... gi\|229370902, gi... - gi\|229608247\|ref\|YP_002878895.1\| hypothetical protein VCD_003165 [Vibrio cholerae MJ-1236], gi\|22937... gi\|148874900, gi... - gi\|153829624\|ref\|ZP_01982291.1\| conserved hypothetical protein [Vibrio cholerae 623-39], gi\|14887490... gi\|229529734, gi... - gi\|229529734\|ref\|ZP_04419124.1\| hypothetical protein VCG_002831 [Vibrio cholerae 12129(1)], gi\|22933... gi\|254291997, gi... - gi\|254291997\|ref\|ZP_04962776.1\| conserved hypothetical protein [Vibrio cholerae AM-19226], gi\|197750... gi\|229518221, gi... - gi\|229518221\|ref\|ZP_04407665.1\| hypothetical protein VCC_002245 [Vibrio cholerae RC9], gi\|229344936\|... gi\|229347328, gi... - gi\|229515559\|ref\|ZP_04405018.1\| hypothetical protein VCB_003217 [Vibrio cholerae TMA 21], gi\|2293473... gi\|149739542, gi... - gi\|153826680\|ref\|ZP_01979347.1\| conserved hypothetical protein [Vibrio cholerae MZO-2], gi\|149739542... gi\|229357451, gi... - gi\|229505228\|ref\|ZP_04394738.1\| hypothetical protein VCF_000436 [Vibrio cholerae BX 330286], gi\|2293... gi\|227009238, gi... - gi\|227081350\|ref\|YP_002809901.1\| hypothetical protein VCM66_1133 [Vibrio cholerae M66-2], gi\|2270092... gi\|254223794, gi... - gi\|75823622\|ref\|ZP_00753111.1\| COG0009: Putative translation factor (SUA5) [Vibrio cholerae RC385], ... gi\|183012994, gi... - gi\|183179583\|ref\|ZP_02957794.1\| conserved hypothetical protein [Vibrio cholerae MZO-3], gi\|183012994... gi\|9655654, gi\|1... - gi\|9655654\|gb\|AAF94337.1\| conserved hypothetical protein [Vibrio cholerae O1 biovar El Tor str. N169... gi\|11279553 - pir\|\|E82233 conserved hypothetical protein VC1178 [imported] - Vibrio cholerae (strain N16961 serogr... gi\|121547954, gi... - gi\|121587790\|ref\|ZP_01677549.1\| conserved hypothetical protein [Vibrio cholerae 2740-80], gi\|1215479... gi\|153215328, gi... - gi\|153215328\|ref\|ZP_01949941.1\| conserved hypothetical protein [Vibrio cholerae 1587], gi\|124114771\|... gi\|153223350, gi... - gi\|153223350\|ref\|ZP_01953808.1\| conserved hypothetical protein [Vibrio cholerae MAK 757], gi\|1241182...	3.0E-69	[1..205]	[1..205]

Back

Predicted Domain #1

Region A:
Residues: [1-206]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQFFYIHPD NPQQRLINQA VDIVRKGGVI VYPTDSGYAL GCKIEDKGAM ERICRIRHLP  60
   61 DGHNFTLMCR DLSELSTYSY VDNVAFRLMK NNTPGNYTFI LKGTKEVPRR LLQEKRKTIG 120
  121 LRVPSNPIAL ALLDTLGEPM LSTSLMLPGS DFTESDPEEI KDRLEKQVDL IIHGGYLGQQ 180
  181 PTTVIDLTND SPVVLREGVG DVTPFL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	73.09691
Match:	1kk9A
Description:	Hypothetical protein YciO
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits