YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|48425694, gi\|...
Organism:	Homo sapiens
Length:	248 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|48425694, gi|....

Description	E-value	Query Range	Subject Range
gi\|5702091 - gi\|5702091\|gb\|AAD47137.1\|AF061181_1 green fluorescent protein-estrogen receptor alpha fusion [Mammal...	246.0	[0..1]	[248..578]
gi\|61357348, gi\|... - gi\|61357348\|gb\|AAX41375.1\| estrogen receptor 1 [synthetic construct], gi\|60814879\|gb\|AAX36323.1\| est... ESR1 - estrogen receptor 1	239.0	[0..1]	[248..307]
gi\|61367423 - gi\|61367423\|gb\|AAX42995.1\| estrogen receptor 1 [synthetic construct]	239.0	[0..1]	[248..307]
gi\|109072322 - gi\|109072322\|ref\|XP_001097228.1\| PREDICTED: estrogen receptor 1 [Macaca mulatta]	239.0	[0..1]	[248..307]
ESR1_FELCA - Estrogen receptor OS=Felis catus GN=ESR1 PE=2 SV=1	238.0	[0..1]	[248..307]
gi\|73945701 - gi\|73945701\|ref\|XP_533454.2\| PREDICTED: similar to Estrogen receptor (ER) (Estradiol receptor) (ER-a...	235.0	[0..1]	[248..308]
gi\|66734827 - gi\|66734827\|gb\|AAY53653.1\| estrogen receptor alpha [Microtus ochrogaster]	234.0	[0..1]	[248..311]

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Predicted Domain #1

Region A:
Residues: [1-248]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ALSLTADQMV SALLDAEPPI LYSEYDPTRP FSEASMMGLL TNLADRELVH MINWAKRVPG  60
   61 FVDLTLHDQV HLLECAWLEI LMIGLVWRSM EHPGKLLFAP NLLLDRNQGK CVEGMVEIFD 120
  121 MLLATSSRFR MMNLQGEEFV CLKSIILLNS GVYTFLSSTL KSLEEKDHIH RVLDKITDTL 180
  181 IHLMAKAGLT LQQQHQRLAQ LLLILSHIRH MSNKGMEHLY SMKCKNVVPL YDLLLEMLDA 240
  241 HRLHAPTS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	54.0
Match:	2iokA
Description:	No description for 2iokA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits