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View Structure Prediction Details

Protein: gi|167782078
Organism: Bos indicus
Length: 142 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|167782078.

Description E-value Query
Range		 Subject
Range
gi|295774, gi|75... - gi|7542833|gb|AAF63624.1|AF249896_1 alpha lactalbumin [Bos taurus], gi|295774|emb|CAA29664.1| alpha-...
 201.0 [0..1] [142..1]
LALBA_SHEEP - Alpha-lactalbumin OS=Ovis aries GN=LALBA PE=1 SV=2
 199.0 [0..1] [142..1]
LALBA_CAPHI - Alpha-lactalbumin OS=Capra hircus GN=LALBA PE=1 SV=1
 198.0 [0..1] [142..1]
LALBA_BOSMU - Alpha-lactalbumin OS=Bos mutus grunniens GN=LALBA PE=2 SV=1
 197.0 [0..1] [142..1]
gi|110612606 - gi|110612606|gb|ABG78269.1| alpha-lactalbumin [Bubalus bubalis]
 195.0 [0..1] [142..1]
LALBA_CANLF - Alpha-lactalbumin OS=Canis lupus familiaris GN=LALBA PE=2 SV=1
 192.0 [0..1] [142..1]
gi|109096369 - gi|109096369|ref|XP_001102116.1| PREDICTED: lactalbumin, alpha- [Macaca mulatta]
 192.0 [0..1] [142..1]
gi|60832429 - gi|60832429|gb|AAX37010.1| lactalbumin alpha [synthetic construct]
 190.0 [0..1] [142..1]

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Predicted Domain #1
Region A:
Residues: [1-142] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMSFVSLLLV GILFHATQAE QLTKCEVFRE LKDLKDYGGV SLPEWVCTTF HTSGYDTQAI  60
   61 VQNNDSTEYG LFQINNKIWC KDDQNPHSSN ICNISCDKFL DDDLTDDIMC VKKILDKVGI 120
  121 NYWLAHKALC SEKLDQWLCE KL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 48.69897
Match: 1hmlA
Description: ALPHA_LACTALBUMIN POSSESSES A DISTINCT ZINC BINDING SITE
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
lysozyme activity 2.92895503832101 bayes_pls_golite062009
hydrolase activity, hydrolyzing O-glycosyl compounds 2.19773407498586 bayes_pls_golite062009
hydrolase activity, acting on glycosyl bonds 1.96160938846041 bayes_pls_golite062009
catalytic activity 1.5828442141425 bayes_pls_golite062009
penicillin binding 1.50909011505977 bayes_pls_golite062009
protein binding 1.08073077929654 bayes_pls_golite062009
drug binding 0.905681096612574 bayes_pls_golite062009
binding 0.887267359956298 bayes_pls_golite062009
transferase activity, transferring glycosyl groups 0.129651578108655 bayes_pls_golite062009
polysaccharide binding 0.00563187712637614 bayes_pls_golite062009
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle