YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|48425221, gi\|...
Organism:	Homo sapiens
Length:	213 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|48425221, gi|....

Description	E-value	Query Range	Subject Range
gi\|109077202 - gi\|109077202\|ref\|XP_001094788.1\| PREDICTED: similar to integrin, alpha 1 precursor [Macaca mulatta]	194.0	[0..3]	[213..166]
ITGA1 - integrin, alpha 1	194.0	[0..3]	[213..166]
gi\|114600333 - gi\|114600333\|ref\|XP_517769.2\| PREDICTED: integrin, alpha 1 [Pan troglodytes]	194.0	[0..3]	[213..166]
ITA1_RAT - Integrin alpha-1 OS=Rattus norvegicus GN=Itga1 PE=1 SV=1	194.0	[0..3]	[213..166]
gi\|74193348 - gi\|74193348\|dbj\|BAE20643.1\| unnamed protein product [Mus musculus]	192.0	[0..3]	[213..166]
gi\|76672081 - gi\|76672081\|ref\|XP_616068.2\| PREDICTED: similar to integrin, alpha 1 precursor, partial [Bos taurus]	192.0	[0..3]	[213..344]
gi\|73954248 - gi\|73954248\|ref\|XP_546328.2\| PREDICTED: similar to integrin, alpha 1 precursor [Canis familiaris]	191.0	[0..3]	[213..169]

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Predicted Domain #1

Region A:
Residues: [1-213]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GSECSTQLDI VIVLDGSNSI YPWDSVTAFL NDLLKRMDIG PKQTQVGIVQ YGENVTHEFN  60
   61 LNKYSSTEEV LVAAKKIVQR GGRQTMTALG TDTARKEAFT EARGARRGVK KVMVIVTDGE 120
  121 SHDNHRLKKV IQDCEDENIQ RFSIAILGSY NRGNLSTEKF VEEIKSIASE PTEKHFFNVS 180
  181 DELALVTIVK TLGERIFALE ATAVDSSGRI VTD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	50.69897
Match:	1pt6A
Description:	I domain from human integrin alpha1-beta1
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.0650247416983729	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: