YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|190409394
Organism:	Saccharomyces cerevisiae RM11-1a
Length:	383 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|190409394.

Description	E-value	Query Range	Subject Range
SPAC7D4.12c - DUF1212 family protein YFPC_SCHPO - Uncharacterized UPF0442 protein C7D4.12c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=S...	0.0	[1..382]	[373..758]
PRM10_MILFA - Pheromone-regulated membrane protein 10 OS=Millerozyma farinosa PE=3 SV=1	0.0	[1..383]	[312..697]
PRM10_YEAST - Pheromone-regulated membrane protein 10 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=... gi\|190409394 - gi\|190409394\|gb\|EDV12659.1\| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a] PRM10 - Pheromone-regulated protein, proposed to be involved in mating; predicted to have 5 transmembrane se...	0.0	[1..383]	[1..383]
gi\|15837905, gi\|... - gi\|9106295\|gb\|AAF84113.1\|AE003963_10 conserved hypothetical protein [Xylella fastidiosa 9a5c], gi\|15... gi\|11360762 - pir\|\|A82699 conserved hypothetical protein XF1304 [imported] - Xylella fastidiosa (strain 9a5c)	2.0E-64	[1..338]	[63..397]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	1.0E-55	[5..302]	[211..499]
gi\|15610873, gi\|... - gi\|2960161\|emb\|CAA18059.1\| PROBABLE CONSERVED TRANSMEMBRANE PROTEIN [Mycobacterium tuberculosis H37R... gi\|7478331 - pir\|\|B70798 probable membrane protein - Mycobacterium tuberculosis (strain H37RV) gi\|167970895, gi... - gi\|167970895\|ref\|ZP_02553172.1\| putative conserved transmembrane protein [Mycobacterium tuberculosis...	7.0E-55	[1..319]	[93..400]
gi\|76782339, gi\|... - gi\|76782339\|ref\|ZP_00769544.1\| COG2966: Uncharacterized conserved protein [Mycobacterium tuberculosi... gi\|124603023, gi... - gi\|81252821\|ref\|ZP_00877397.1\| COG2966: Uncharacterized conserved protein [Mycobacterium tuberculosi... gi\|253322287, gi... - gi\|253800784\|ref\|YP_003033785.1\| hypothetical protein TBMG_03782 [Mycobacterium tuberculosis KZN 143... gi\|254552851 - gi\|254552851\|ref\|ZP_05143298.1\| hypothetical protein Mtube_20801 [Mycobacterium tuberculosis '98-R60... gi\|254818033 - gi\|254818033\|ref\|ZP_05223034.1\| putative transmembrane protein [Mycobacterium tuberculosis KZN 4207] gi\|255094953 - gi\|255094953\|ref\|ZP_05324431.1\| putative transmembrane protein [Mycobacterium tuberculosis KZN 605] gi\|121639653, gi... - gi\|121639653\|ref\|YP_979877.1\| putative transmembrane protein [Mycobacterium bovis BCG str. Pasteur 1... gi\|15843358, gi\|... - gi\|15843358\|ref\|NP_338395.1\| hypothetical protein MT3842 [Mycobacterium tuberculosis CDC1551], gi\|13... gi\|31620507, gi\|... - gi\|31794909\|ref\|NP_857402.1\| transmembrane protein [Mycobacterium bovis AF2122/97], gi\|31620507\|emb\|... gi\|215405792 - gi\|215405792\|ref\|ZP_03417973.1\| transmembrane protein [Mycobacterium tuberculosis 02_1987] gi\|254366282, gi... - gi\|254366282\|ref\|ZP_04982326.1\| conserved transmembrane protein [Mycobacterium tuberculosis str. Haa... gi\|215432718 - gi\|215432718\|ref\|ZP_03430637.1\| transmembrane protein [Mycobacterium tuberculosis EAS054] gi\|215424984 - gi\|215424984\|ref\|ZP_03422903.1\| transmembrane protein [Mycobacterium tuberculosis T92] gi\|219559822 - gi\|219559822\|ref\|ZP_03538898.1\| transmembrane protein [Mycobacterium tuberculosis T17] gi\|215448081 - gi\|215448081\|ref\|ZP_03434833.1\| transmembrane protein [Mycobacterium tuberculosis T85] gi\|224775264, gi... - gi\|224992149\|ref\|YP_002646838.1\| putative transmembrane protein [Mycobacterium bovis BCG str. Tokyo ...	1.0E-54	[1..319]	[93..400]
gi\|13364802 - gi\|13364802\|dbj\|BAB38747.1\| putative structural protein [Escherichia coli O157:H7 str. Sakai] gi\|25391967, gi\|... - pir\|\|G86135 probable structural protein yjjP [imported] - Escherichia coli (strain O157:H7, substrai... gi\|195937637 - gi\|195937637\|ref\|ZP_03083019.1\| putative structural protein [Escherichia coli O157:H7 str. EC4024] gi\|12519390, gi\|... - gi\|15804938\|ref\|NP_290980.1\| putative structural protein [Escherichia coli O157:H7 EDL933], gi\|12519... gi\|13364802 - gi\|13364802\|dbj\|BAB38747.1\| putative structural protein [Escherichia coli O157:H7]	4.0E-51	[4..203]	[80..273]
gi\|25513446, gi\|... - gi\|25513446\|pir\|\|AI1070 probable membrane protein STY4899 [imported] - Salmonella enterica subsp. en... gi\|16763344 - gi\|16763344\|ref\|NP_458961.1\| hypothetical protein STY4899 [Salmonella enterica subsp. enterica serov... gi\|29144822, gi\|... - gi\|29144822\|ref\|NP_808164.1\| hypothetical protein t4589 [Salmonella enterica subsp. enterica serovar...	5.0E-49	[4..203]	[106..299]

Back

Predicted Domain #1

Region A:
Residues: [1-212]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIVSFGDATT RTSEVQLVRC TQGLNLWKLH QVHAVYKRVV HDTLGADEGN ALLDQILADT  60
   61 NLYPPWMCVL LYAFCSAMVT PYAFGGDWVN LAISFFMGLC VGSLQFILSQ KSYMYSNVFE 120
  121 ISASIVVSFC GRAFGSIPRS HICFGAVTQG SLALILPGYI ILCGALELQS RSLVAGAVRM 180
  181 FYAIIYSLFL GFGITLGSAL FGWMYHNATN EI

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [213-383]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SCPQLISPWF RFLFVPAFTI SISLLNQAHI SQLPVMVFIS CTGYVVTYWA GKHFANSTEF  60
   61 TAALAAFVIG VLGNLYSRIW KGLAVSAMLP AIFVQVPSGI ASQNSLLSGL QSANTIVNAN 120
  121 ETITTSTSDP SSSMSFGMTM IQVCVGISVG LFASSLFVYP FGKKKTGLFS L

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.404	a.1.1	Globin-like
View	Download	0.507	d.19.1	MHC antigen-recognition domain
View	Download	0.451	a.26.1	4-helical cytokines
View	Download	0.529	a.22.1	Histone-fold
View	Download	0.529	a.22.1	Histone-fold
View	Download	0.507	d.19.1	MHC antigen-recognition domain
View	Download	0.451	a.26.1	4-helical cytokines
View	Download	0.420	d.162.1	LDH C-terminal domain-like
View	Download	0.420	d.162.1	LDH C-terminal domain-like
View	Download	0.404	a.1.1	Globin-like
View	Download	0.398	a.24.9	alpha-catenin/vinculin
View	Download	0.382	a.26.1	4-helical cytokines
View	Download	0.379	a.24.3	Cytochromes
View	Download	0.361	a.90.1	Transcription factor STAT-4 N-domain
View	Download	0.355	a.26.1	4-helical cytokines
View	Download	0.346	f.35.1	Multidrug efflux transporter AcrB transmembrane domain
View	Download	0.346	c.58.1	Aminoacid dehydrogenase-like, N-terminal domain
View	Download	0.334	a.27.1	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
View	Download	0.331	c.37.1	P-loop containing nucleoside triphosphate hydrolases
View	Download	0.328	a.24.4	Hemerythrin
View	Download	0.325	a.100.1	6-phosphogluconate dehydrogenase C-terminal domain-like
View	Download	0.304	a.29.3	Acyl-CoA dehydrogenase C-terminal domain-like
View	Download	0.294	a.27.1	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
View	Download	0.290	a.29.3	Acyl-CoA dehydrogenase C-terminal domain-like
View	Download	0.289	f.35.1	Multidrug efflux transporter AcrB transmembrane domain
View	Download	0.271	a.7.3	Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain
View	Download	0.267	a.146.1	Telomeric repeat binding factor (TRF) dimerisation domain
View	Download	0.230	a.97.1	An anticodon-binding domain of class I aminoacyl-tRNA synthetases
View	Download	0.221	c.26.2	Adenine nucleotide alpha hydrolases-like
View	Download	0.218	c.28.1	Cryptochrome/photolyase, N-terminal domain
View	Download	0.214	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.206	d.150.1	4'-phosphopantetheinyl transferase
View	Download	0.204	f.13.1	Family A G protein-coupled receptor-like
View	Download	0.201	d.26.1	FKBP-like

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits