| Protein: | gi|18423700, gi|... |
| Organism: | Arabidopsis thaliana |
| Length: | 523 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|18423700, gi|....
| Description | E-value | Query Range |
Subject Range |
|
|
291.0 | [0..1] | [505..65] |
|
Region A: Residues: [1-134] |
1 11 21 31 41 51
| | | | | |
1 MIMYGGGGAG KDGGSTNHLS DGGVILKKGP WTAAEDEILA AYVRENGEGN WNAVQKNTGL 60
61 ARCGKSCRLR WANHLRPNLK KGSFTGDEER LIIQLHAQLG NKWARMAAQL PGRTDNEIKN 120
121 YWNTRLKRLL RQGL
|
| Detection Method: |  |
| Confidence: | 54.522879 |
| Match: | 1h88C |
| Description: | c-Myb, DNA-binding domain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.334577365229545 | bayes_pls_golite062009 |
| transcription regulator activity | 0.0696342306231097 | bayes_pls_golite062009 |
|
Region A: Residues: [135-315] |
1 11 21 31 41 51
| | | | | |
1 PLYPPDIIPN HQLHPHPHHQ QQQQHNHHHH HHQQQQQHQQ MYFQPQSSQR NTPSSSPLPS 60
61 PTPANAKSSS SFTFHTTTAN LLHPLSPHTP NTPSQLSSTP PPPPLSSPLC SPRNNQYPTL 120
121 PLFALPRSQI NNNNNGNFTF PRPPPLLQPP SSLFAKRYNN ANTPLNCINR VSTAPFSPVS 180
181 R
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [316-523] |
1 11 21 31 41 51
| | | | | |
1 DSYTSFLTLP YPSPTAQTAT YHNTNNPYSS SPSFSLNPSS SSYPTSTSSP SFLHSHYTPS 60
61 STSFHTNPVY SMKQEQLPSN QIPQIDGFNN VNNFTDNERQ NHNLNSSGAH RRSSSCSLLE 120
121 DVFEEAEALA SGGRGRPPKR RQLTASLPNH NNNTNNNDNF FSVSFGHYDS SDNLCSLQGK 180
181 TKTTYNTSNL NYSSLQVKCK MFMIKTQI
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
