YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|207345659
Organism:	Saccharomyces cerevisiae AWRI1631
Length:	204 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|207345659.

Description	E-value	Query Range	Subject Range
LOC1_YEAST - 60S ribosomal subunit assembly/export protein LOC1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /... LOC1 - Nuclear protein involved in asymmetric localization of ASH1 mRNA; binds double-stranded RNA in vitro... gi\|207345659 - gi\|207345659\|gb\|EDZ72411.1\| YFR001Wp-like protein [Saccharomyces cerevisiae AWRI1631] gi\|190406573 - gi\|190406573\|gb\|EDV09840.1\| hypothetical protein SCRG_05547 [Saccharomyces cerevisiae RM11-1a] LOC1_YEAS7 - 60S ribosomal subunit assembly/export protein LOC1 OS=Saccharomyces cerevisiae (strain YJM789) GN=LO...	1.0E-52	[1..204]	[1..204]
LOC1_NEUCR - 60S ribosomal subunit assembly/export protein loc-1 OS=Neurospora crassa GN=loc-1 PE=3 SV=1 LOC1_NEUCR - 60S ribosomal subunit assembly/export protein loc-1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR2...	7.0E-18	[1..165]	[1..163]

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Predicted Domain #1

Region A:
Residues: [1-204]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPKKPSKRQ NLRREVAPEV FQDSQARNQL ANVPHLTEKS AQRKPSKTKV KKEQSLARLY  60
   61 GAKKDKKGKY SEKDLNIPTL NRAIVPGVKI RRGKKGKKFI ADNDTLTLNR LITTIGDKYD 120
  121 DIAESKLEKA RRLEEIRELK RKEIERKEAL KQDKLEEKKD EIKKKSSVAR TIRRKNKRDM 180
  181 LKSEAKASES KTEGRKVKKV SFAQ

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits