YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|213582687
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. E98-0664
Length:	346 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|213582687.

Description	E-value	Query Range	Subject Range
gi\|161614994, gi... - gi\|161614994\|ref\|YP_001588959.1\| aldose 1-epimerase [Salmonella enterica subsp. enterica serovar Par... gi\|205324641, gi... - gi\|205324641\|gb\|EDZ12480.1\| galactose mutarotase [Salmonella enterica subsp. enterica serovar Saintp... gi\|238913333 - gi\|238913333\|ref\|ZP_04657170.1\| aldose 1-epimerase [Salmonella enterica subsp. enterica serovar Tenn... gi\|62126974, gi\|... - gi\|62179341\|ref\|YP_215758.1\| aldose 1-epimerase [Salmonella enterica subsp. enterica serovar Cholera... gi\|205271813, gi... - gi\|205352032\|ref\|YP_002225833.1\| aldose 1-epimerase [Salmonella enterica subsp. enterica serovar Gal... lcl\|NC_016856.1_... - [gene=galM] [protein=aldose 1-epimerase] [protein_id=YP_005236492.1] [location=complement(837679..83... gi\|197262342, gi... - gi\|197262342\|ref\|ZP_03162416.1\| galactose mutarotase [Salmonella enterica subsp. enterica serovar Sa... gi\|199603460, gi... - gi\|200391015\|ref\|ZP_03217626.1\| galactose mutarotase [Salmonella enterica subsp. enterica serovar Vi... gi\|194446021, gi... - gi\|194446021\|ref\|YP_002040009.1\| galactose mutarotase [Salmonella enterica subsp. enterica serovar N... gi\|194456599, gi... - gi\|194470235\|ref\|ZP_03076219.1\| galactose mutarotase [Salmonella enterica subsp. enterica serovar Ke... gi\|16764137, gi\|... - gi\|16764137\|ref\|NP_459752.1\| aldose 1-epimerase [Salmonella typhimurium LT2], gi\|16419278\|gb\|AAL1971... gi\|168263735, gi... - gi\|205347833\|gb\|EDZ34464.1\| galactose mutarotase [Salmonella enterica subsp. enterica serovar Hadar ... gi\|168466357, gi... - gi\|195630990\|gb\|EDX49576.1\| galactose mutarotase [Salmonella enterica subsp. enterica serovar Newpor... gi\|167994419, gi... - gi\|205327694\|gb\|EDZ14458.1\| galactose mutarotase [Salmonella enterica subsp. enterica serovar 4,[5],... gi\|168230655, gi... - gi\|205334814\|gb\|EDZ21578.1\| galactose mutarotase [Salmonella enterica subsp. enterica serovar Kentuc...	0.0	[1..346]	[1..346]
gi\|197094523, gi... - gi\|197363046\|ref\|YP_002142683.1\| aldose 1-epimerase [Salmonella enterica subsp. enterica serovar Par... gi\|56128381, gi\|... - gi\|56414124\|ref\|YP_151199.1\| aldose 1-epimerase [Salmonella enterica subsp. enterica serovar Paratyp...	0.0	[1..346]	[1..346]
gi\|75511358, gi\|... - gi\|75511358\|ref\|ZP_00734043.1\| COG2017: Galactose mutarotase and related enzymes [Escherichia coli 5... gi\|124531873, gi... - gi\|124531873\|ref\|ZP_01701972.1\| galactose mutarotase [Escherichia coli B], gi\|124498294\|gb\|EAY45812.... gi\|170020906, gi... - gi\|170020906\|ref\|YP_001725860.1\| aldose 1-epimerase [Escherichia coli ATCC 8739], gi\|169755834\|gb\|AC... GALM_ECOLI - Aldose 1-epimerase (EC 5.1.3.3) (Mutarotase) - Escherichia coli gi\|81244587, gi\|... - gi\|82543176\|ref\|YP_407123.1\| aldose 1-epimerase [Shigella boydii Sb227], gi\|81244587\|gb\|ABB65295.1\| ... gi\|170681719, gi... - gi\|170681719\|ref\|YP_001742859.1\| galactose mutarotase [Escherichia coli SMS-3-5], gi\|170519437\|gb\|AC... gi\|170080416, gi... - gi\|170080416\|ref\|YP_001729736.1\| galactose-1-epimerase (mutarotase) [Escherichia coli str. K-12 subs... gi\|218360044, gi... - gi\|218553276\|ref\|YP_002386189.1\| aldose 1-epimerase [Escherichia coli IAI1], gi\|218360044\|emb\|CAQ975... gi\|89107607, gi\|... - gi\|89107607\|ref\|AP_001387.1\| galactose-1-epimerase [Escherichia coli str. K-12 substr. W3110], gi\|16... gi\|209918000, gi... - gi\|209918000\|ref\|YP_002292084.1\| aldose 1-epimerase [Escherichia coli SE11], gi\|209911259\|dbj\|BAG763... EG11698 - aldose 1-epimerase; type-1 mutarotase; galactose mutarotase / Aldose 1-epimerase, type-1 mutarotase;... gi\|110804625, gi... - gi\|110804625\|ref\|YP_688145.1\| aldose 1-epimerase [Shigella flexneri 5 str. 8401], gi\|110614173\|gb\|AB... gi\|218694173, gi... - gi\|218694173\|ref\|YP_002401840.1\| aldose 1-epimerase [Escherichia coli 55989], gi\|218350905\|emb\|CAU96... gi\|194439766, gi... - gi\|83584859\|ref\|ZP_00923518.1\| COG2017: Galactose mutarotase and related enzymes [Escherichia coli 1... gi\|187733828, gi... - gi\|75175248\|ref\|ZP_00695558.1\| COG2017: Galactose mutarotase and related enzymes [Shigella boydii BS... gi\|157157316, gi... - gi\|75189770\|ref\|ZP_00703037.1\| COG2017: Galactose mutarotase and related enzymes [Escherichia coli E... gi\|157065911, gi... - gi\|75194909\|ref\|ZP_00704979.1\| COG2017: Galactose mutarotase and related enzymes [Escherichia coli H... gi\|194429691, gi... - gi\|75209075\|ref\|ZP_00709333.1\| COG2017: Galactose mutarotase and related enzymes [Escherichia coli B... gi\|75228377, gi\|... - gi\|75228377\|ref\|ZP_00715025.1\| COG2017: Galactose mutarotase and related enzymes [Escherichia coli B... gi\|75235773, gi\|... - gi\|75235773\|ref\|ZP_00719928.1\| COG2017: Galactose mutarotase and related enzymes [Escherichia coli E... gi\|192926798, gi... - gi\|75256340\|ref\|ZP_00728010.1\| COG2017: Galactose mutarotase and related enzymes [Escherichia coli E... GALM_SHIFL - Aldose 1-epimerase OS=Shigella flexneri GN=galM PE=3 SV=1 gi\|24050786, gi\|... - gi\|24111975\|ref\|NP_706485.1\| aldose 1-epimerase [Shigella flexneri 2a str. 301], gi\|24050786\|gb\|AAN4... gi\|30040332, gi\|... - gi\|30062088\|ref\|NP_836259.1\| aldose 1-epimerase [Shigella flexneri 2a str. 2457T], gi\|30040332\|gb\|AA... EG11698 - aldose 1-epimerase; type-1 mutarotase; galactose mutarotase / Aldose 1-epimerase, type-1 mutarotase;... gi\|238900014, gi... - gi\|238900014\|ref\|YP_002925810.1\| galactose-1-epimerase (mutarotase) [Escherichia coli BW2952], gi\|23... gi\|253972720, gi... - gi\|254160819\|ref\|YP_003043927.1\| galactose-1-epimerase (mutarotase) [Escherichia coli B str. REL606]...	0.0	[1..343]	[1..343]
gi\|82776030, gi\|... - gi\|82776030\|ref\|YP_402377.1\| aldose 1-epimerase [Shigella dysenteriae Sd197], gi\|81240178\|gb\|ABB6088...	0.0	[1..343]	[1..343]
gi\|75237092, gi\|... - gi\|75237092\|ref\|ZP_00721146.1\| COG2017: Galactose mutarotase and related enzymes [Escherichia coli F... gi\|110342549, gi... - gi\|110640957\|ref\|YP_668685.1\| aldose 1-epimerase [Escherichia coli 536], gi\|110342549\|gb\|ABG68786.1\|... gi\|26107121, gi\|... - gi\|26246722\|ref\|NP_752762.1\| aldose 1-epimerase [Escherichia coli CFT073], gi\|26107121\|gb\|AAN79305.1... gi\|218364431, gi... - gi\|218557662\|ref\|YP_002390575.1\| aldose 1-epimerase [Escherichia coli S88], gi\|218364431\|emb\|CAR0211... gi\|227839035, gi... - gi\|227884283\|ref\|ZP_04002088.1\| aldose 1-epimerase [Escherichia coli 83972], gi\|227839035\|gb\|EEJ4950... gi\|237707288, gi... - gi\|237707288\|ref\|ZP_04537769.1\| aldose 1-epimerase [Escherichia sp. 3_2_53FAA], gi\|226898498\|gb\|EEH8... gi\|91209784, gi\|... - gi\|91209784\|ref\|YP_539770.1\| aldose 1-epimerase [Escherichia coli UTI89], gi\|91071358\|gb\|ABE06239.1\|... gi\|218688540, gi... - gi\|218688540\|ref\|YP_002396752.1\| aldose 1-epimerase [Escherichia coli ED1a], gi\|218426104\|emb\|CAR069... gi\|115512064, gi... - gi\|117622940\|ref\|YP_851853.1\| aldose 1-epimerase [Escherichia coli APEC O1], gi\|115512064\|gb\|ABJ0013...	0.0	[1..343]	[1..343]
gi\|29340845, gi\|... - gi\|29348938\|ref\|NP_812441.1\| aldose 1-epimerase precursor [Bacteroides thetaiotaomicron VPI-5482], g...	0.0	[1..344]	[29..373]
gi\|209160006, gi... - gi\|209398606\|ref\|YP_002269384.1\| galactose mutarotase [Escherichia coli O157:H7 str. EC4115], gi\|209... gi\|208738041, gi... - gi\|208822556\|ref\|ZP_03262875.1\| galactose mutarotase [Escherichia coli O157:H7 str. EC4042], gi\|2087... gi\|208816066, gi... - gi\|208816066\|ref\|ZP_03257245.1\| galactose mutarotase [Escherichia coli O157:H7 str. EC4045], gi\|2087... gi\|208727284, gi... - gi\|208807483\|ref\|ZP_03249820.1\| galactose mutarotase [Escherichia coli O157:H7 str. EC4206], gi\|2087... gi\|217324497, gi... - gi\|217324497\|ref\|ZP_03440581.1\| galactose mutarotase [Escherichia coli O157:H7 str. TW14588], gi\|217... gi\|187768155, gi... - gi\|187768155\|gb\|EDU31999.1\| galactose mutarotase [Escherichia coli O157:H7 str. EC4196], gi\|16877649... gi\|189363358, gi... - gi\|189363358\|gb\|EDU81777.1\| galactose mutarotase [Escherichia coli O157:H7 str. EC4486], gi\|16876720... gi\|168763346, gi... - gi\|189366439\|gb\|EDU84855.1\| galactose mutarotase [Escherichia coli O157:H7 str. EC4501], gi\|16876334... gi\|189355837, gi... - gi\|189355837\|gb\|EDU74256.1\| galactose mutarotase [Escherichia coli O157:H7 str. EC4401], gi\|16875704... gi\|195936744 - gi\|195936744\|ref\|ZP_03082126.1\| aldose 1-epimerase [Escherichia coli O157:H7 str. EC4024] gi\|254591307, gi... - gi\|254791907\|ref\|YP_003076744.1\| galactose-1-epimerase (mutarotase) [Escherichia coli O157:H7 str. T... gi\|168800812, gi... - gi\|189376935\|gb\|EDU95351.1\| galactose mutarotase [Escherichia coli O157:H7 str. EC508], gi\|168800812... gi\|189373136, gi... - gi\|189373136\|gb\|EDU91552.1\| galactose mutarotase [Escherichia coli O157:H7 str. EC869], gi\|168786915... gi\|168779244, gi... - gi\|189003134\|gb\|EDU72120.1\| galactose mutarotase [Escherichia coli O157:H7 str. EC4076], gi\|16877924... gi\|209776310, gi... - pir\|\|H90726 galactose-1-epimerase [imported] - Escherichia coli (strain O157:H7, substrain RIMD 0509... gi\|13360243, gi\|... - gi\|15830038\|ref\|NP_308811.1\| galactose-1-epimerase [Escherichia coli O157:H7], gi\|13360243\|dbj\|BAB34... gi\|168750248, gi... - gi\|188015536\|gb\|EDU53658.1\| galactose mutarotase [Escherichia coli O157:H7 str. EC4113], gi\|16875024... gi\|13360243, gi\|... - gi\|15830038\|ref\|NP_308811.1\| aldose 1-epimerase [Escherichia coli O157:H7 str. Sakai], gi\|13360243\|d...	0.0	[1..343]	[1..343]
gi\|25307138 - pir\|\|A85578 galactose-1-epimerase (mutarotase) [imported] - Escherichia coli (strain O157:H7, substr... gi\|12513685, gi\|... - gi\|15800465\|ref\|NP_286477.1\| aldose 1-epimerase [Escherichia coli O157:H7 EDL933], gi\|12513685\|gb\|AA...	0.0	[1..343]	[1..343]
gi\|194435023, gi... - gi\|83568958\|ref\|ZP_00920423.1\| COG2017: Galactose mutarotase and related enzymes [Shigella dysenteri...	0.0	[1..343]	[1..343]
gi\|88805087, gi\|... - gi\|88805087\|ref\|ZP_01120607.1\| aldose 1-epimerase [Robiginitalea biformata HTCC2501], gi\|88785966\|gb...	0.0	[4..344]	[73..417]

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Predicted Domain #1

Region A:
Residues: [1-346]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLNETPALAP DGQPYRLLTL RNSAGMVVTL MDWGATLLSA RIPLSDGSVR EALLGCASPE  60
   61 HYPEQTSFLG ASIGRYANRI ANSRYTFAGE TVQLSPSQGE NQLHGGPEGF DKRRWQIVNQ 120
  121 NDRQVLFALT SDDGDQGFPG HLCATAQYRL TDDNRISITY RATVDKPCPV NLTNHVYFNL 180
  181 DGDRTDVRQH KLQILADEYL PVDESGIPRQ GLKSVANTSF DFRMPKVIAS EFLADDDQRK 240
  241 VKSYDHAFLL QTQGDGKKPA ARLWSQDGKL QMMVYTTAPA LQFYSGNYLA GTPSRGPEPY 300
  301 ADWQGLALES ELLPDSPNHP EWPQPDCILR PGEEYASLTE YQFIPF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	100.0
Match:	1snzA
Description:	Crystal structure of apo human galactose mutarotase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
aldose 1-epimerase activity	2.85100059704396	bayes_pls_golite062009
catalytic activity	0.770933849734279	bayes_pls_golite062009
racemase and epimerase activity, acting on carbohydrates and derivatives	0.68102716507433	bayes_pls_golite062009
racemase and epimerase activity	0.473636146090495	bayes_pls_golite062009
UDP-glucose 4-epimerase activity	0.46846097606394	bayes_pls_golite062009
binding	0.381228414514023	bayes_pls_golite062009
isomerase activity	0.106573908779409	bayes_pls_golite062009
protein binding	0.078592895113726	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: