YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|167773923
Organism:	synthetic construct
Length:	141 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|167773923.

Description	E-value	Query Range	Subject Range
gi\|114577766 - gi\|114577766\|ref\|XP_001167206.1\| PREDICTED: hypothetical protein isoform 1 [Pan troglodytes]	187.0	[0..1]	[141..54]
gi\|89031517 - gi\|89031517\|ref\|XP_931120.1\| PREDICTED: similar to hCG1791993 [Homo sapiens]	178.0	[0..1]	[141..1]
C1D_BOVIN - Nuclear nucleic acid-binding protein C1D OS=Bos taurus GN=C1D PE=2 SV=1	178.0	[0..1]	[140..1]
gi\|109103210 - gi\|109103210\|ref\|XP_001093680.1\| PREDICTED: similar to nuclear DNA-binding protein [Macaca mulatta]	177.0	[0..1]	[141..1]
gi\|73970225 - gi\|73970225\|ref\|XP_855373.1\| PREDICTED: similar to nuclear DNA-binding protein [Canis familiaris]	175.0	[0..1]	[140..15]

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Predicted Domain #1

Region A:
Residues: [1-141]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGEEINEDY PVEIHEYLSA FENSIGAVDE MLKTMMSVSR NELLQKLDPL EQAKVDLVSA  60
   61 YTLNSMFWVY LATQGVNPKE HPVKQELERI RVYMNRVKEI TDKKKAGKLD RGAASRFVKN 120
  121 ALWEPKSKNA SKVANKGKSK S

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	24.387216
Match:	PF04000.6
Description:	No description for PF04000.6 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits