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View Structure Prediction Details

Protein: gi|221316304
Organism: Bacillus subtilis subsp. subtilis str. NCIB 3610
Length: 448 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|221316304.

Description E-value Query
Range
Subject
Range
gi|83363652, gi|... - gi|83375123|ref|ZP_00919887.1| TRAP dicarboxylate transporter, DctM subunit [Rhodobacter sphaeroides...
190.0 [0..4] [447..375]

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Predicted Domain #1
Region A:
Residues: [1-132]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPLIIVALGI LALLFLIMGL KLNTFISLLV VSFGVALALG MPFDKVVSSI EAGIGGTLGH  60
   61 IALIFGLGAM LGKLIADSGG AQRIAMTLVN KFGEKNIQWA VVIASFIIGI ALFFEVGLVL 120
  121 LIPIVFAISR EL

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [133-270]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KISILFLGIP MVAALSVTHG FLPPHPGPTA IAGEYGANIG EVLLYGFIVA VPTVLIAGPL  60
   61 FTKFAKKIVP ASFAKNGNIA SLGTQKTFNL EETPGFGISV FTAMLPIIIM SVATIIDLLQ 120
  121 ETIGFADNGV LAFIRLIG

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [271-448]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NASTAMIISL LVAVYTMGIK RNIPVKTVMD SCSTAISQIG MMLLIIGGGG AFKQVLINGG  60
   61 VGDYVADLFK GTALSPIILA WLIAAILRIS LGSATVAALS TTGLVIPLLG HSDVNLALVV 120
  121 LATGAGSVIA SHVNDAGFWM FKEYFGLSMK ETFATWTLLE TIISVAGLGF ILLLSLVV

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle