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View Structure Prediction Details

Protein: gi|221316304
Organism: Bacillus subtilis subsp. subtilis str. NCIB 3610
Length: 448 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|221316304.

Description E-value Query
Range
Subject
Range
gi|83363652, gi|... - gi|83375123|ref|ZP_00919887.1| TRAP dicarboxylate transporter, DctM subunit [Rhodobacter sphaeroides...
190.0 [0..4] [447..375]

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Predicted Domain #1
Region A:
Residues: [1-132]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPLIIVALGI LALLFLIMGL KLNTFISLLV VSFGVALALG MPFDKVVSSI EAGIGGTLGH  60
   61 IALIFGLGAM LGKLIADSGG AQRIAMTLVN KFGEKNIQWA VVIASFIIGI ALFFEVGLVL 120
  121 LIPIVFAISR EL

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [133-270]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KISILFLGIP MVAALSVTHG FLPPHPGPTA IAGEYGANIG EVLLYGFIVA VPTVLIAGPL  60
   61 FTKFAKKIVP ASFAKNGNIA SLGTQKTFNL EETPGFGISV FTAMLPIIIM SVATIIDLLQ 120
  121 ETIGFADNGV LAFIRLIG

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [271-448]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NASTAMIISL LVAVYTMGIK RNIPVKTVMD SCSTAISQIG MMLLIIGGGG AFKQVLINGG  60
   61 VGDYVADLFK GTALSPIILA WLIAAILRIS LGSATVAALS TTGLVIPLLG HSDVNLALVV 120
  121 LATGAGSVIA SHVNDAGFWM FKEYFGLSMK ETFATWTLLE TIISVAGLGF ILLLSLVV

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle