YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|205331205, gi...
Organism:	Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701
Length:	210 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|205331205, gi....

Description	E-value	Query Range	Subject Range
gi\|195633661, gi... - gi\|195633661\|gb\|EDX52075.1\| hydrolase, NUDIX family [Salmonella enterica subsp. enterica serovar New... gi\|168262857, gi... - gi\|205348594\|gb\|EDZ35225.1\| hydrolase, NUDIX family [Salmonella enterica subsp. enterica serovar Had... gi\|205337887, gi... - gi\|205337887\|gb\|EDZ24651.1\| hydrolase, NUDIX family [Salmonella enterica subsp. enterica serovar Hei... gi\|197288969, gi... - gi\|197288969\|gb\|EDY28340.1\| hydrolase, NUDIX family protein [Salmonella enterica subsp. enterica ser... gi\|62129332, gi\|... - gi\|62181699\|ref\|YP_218116.1\| ADP-ribose pyrophosphatase NudF [Salmonella enterica subsp. enterica se... gi\|205333872, gi... - gi\|205333872\|gb\|EDZ20636.1\| hydrolase, NUDIX family [Salmonella enterica subsp. enterica serovar Ken... gi\|205323325, gi... - gi\|205323325\|gb\|EDZ11164.1\| hydrolase, NUDIX family [Salmonella enterica subsp. enterica serovar Sai... gi\|238909986 - gi\|238909986\|ref\|ZP_04653823.1\| ADP-ribose pyrophosphatase NudF [Salmonella enterica subsp. enterica... gi\|224584986, gi... - gi\|224584986\|ref\|YP_002638785.1\| hypothetical protein SPC_3259 [Salmonella enterica subsp. enterica ... gi\|204928165, gi... - gi\|204928165\|ref\|ZP_03219365.1\| hydrolase, NUDIX family [Salmonella enterica subsp. enterica serovar... gi\|199605157, gi... - gi\|200388059\|ref\|ZP_03214671.1\| hydrolase, NUDIX family [Salmonella enterica subsp. enterica serovar... gi\|197249833, gi... - gi\|197249833\|ref\|YP_002148112.1\| hydrolase, NUDIX family [Salmonella enterica subsp. enterica serova... gi\|194710227, gi... - gi\|194734725\|ref\|YP_002116140.1\| hydrolase, NUDIX family [Salmonella enterica subsp. enterica serova... gi\|194469990, gi... - gi\|194469990\|ref\|ZP_03075974.1\| hydrolase, NUDIX family [Salmonella enterica subsp. enterica serovar... gi\|194450031, gi... - gi\|194450031\|ref\|YP_002047182.1\| ADP-ribose pyrophosphatase NudF [Salmonella enterica subsp. enteric... gi\|194442306, gi... - gi\|194442306\|ref\|YP_002042452.1\| hydrolase, NUDIX family [Salmonella enterica subsp. enterica serova... gi\|168819752, gi... - gi\|205343414\|gb\|EDZ30178.1\| hydrolase, NUDIX family [Salmonella enterica subsp. enterica serovar Wel...	1.0E-43	[1..210]	[1..210]
gi\|110344872, gi... - gi\|110643280\|ref\|YP_671010.1\| ADP-ribose pyrophosphatase NudF [Escherichia coli 536], gi\|110344872\|g...	9.0E-42	[1..208]	[1..208]
gi\|238716278, gi... - gi\|77959530\|ref\|ZP_00823549.1\| COG0494: NTP pyrophosphohydrolases including oxidative damage repair ...	1.0E-41	[1..209]	[1..209]
gi\|110806927, gi... - gi\|110806927\|ref\|YP_690447.1\| ADP-ribose pyrophosphatase NudF [Shigella flexneri 5 str. 8401], gi\|11...	1.0E-41	[1..208]	[1..208]
gi\|85675837, gi\|... - gi\|89109804\|ref\|AP_003584.1\| ADP-ribose pyrophosphatase [Escherichia coli str. K-12 substr. W3110], ... gi\|91074034, gi\|... - gi\|91212460\|ref\|YP_542446.1\| ADP-ribose pyrophosphatase NudF [Escherichia coli UTI89], gi\|91074034\|g... gi\|13363395, gi\|... - gi\|15833176\|ref\|NP_311949.1\| ADP-ribose pyrophosphatase NudF [Escherichia coli O157:H7 str. Sakai], ... gi\|73857049, gi\|... - gi\|74313572\|ref\|YP_311991.1\| ADP-ribose pyrophosphatase NudF [Shigella sonnei Ss046], gi\|73857049\|gb... gi\|82778357, gi\|... - gi\|82778357\|ref\|YP_404706.1\| ADP-ribose pyrophosphatase NudF [Shigella dysenteriae Sd197], gi\|812425... ADPP_ECOL6 - ADP-ribose pyrophosphatase OS=Escherichia coli O6 GN=nudF PE=3 SV=1 ADPP_ECO57 - ADP-ribose pyrophosphatase OS=Escherichia coli O157:H7 GN=nudF PE=3 SV=1 ADPP_SHIFL - ADP-ribose pyrophosphatase OS=Shigella flexneri GN=nudF PE=3 SV=1 ADPP_ECOLI - ADP-ribose pyrophosphatase (EC 3.6.1.13) (ADP-ribose diphosphatase) (Adenosine diphosphoribose pyrop... gi\|24053496, gi\|... - gi\|24114335\|ref\|NP_708845.1\| ADP-ribose pyrophosphatase NudF [Shigella flexneri 2a str. 301], gi\|240... gi\|218353472, gi... - gi\|218696740\|ref\|YP_002404407.1\| ADP-ribose pyrophosphatase NudF [Escherichia coli 55989], gi\|218353... gi\|218701808, gi... - gi\|218701808\|ref\|YP_002409437.1\| ADP-ribose pyrophosphatase NudF [Escherichia coli IAI39], gi\|218371... gi\|218706661, gi... - gi\|218706661\|ref\|YP_002414180.1\| ADP-ribose pyrophosphatase NudF [Escherichia coli UMN026], gi\|21843... gi\|217327428, gi... - gi\|217327428\|ref\|ZP_03443511.1\| hydrolase, NUDIX family [Escherichia coli O157:H7 str. TW14588], gi\|... gi\|218555604, gi... - gi\|218555604\|ref\|YP_002388517.1\| ADP-ribose pyrophosphatase NudF [Escherichia coli IAI1], gi\|2183623... gi\|218366888, gi... - gi\|218560119\|ref\|YP_002393032.1\| ADP-ribose pyrophosphatase NudF [Escherichia coli S88], gi\|21836688... gi\|218691337, gi... - gi\|218691337\|ref\|YP_002399549.1\| ADP-ribose pyrophosphatase NudF [Escherichia coli ED1a], gi\|2184289... gi\|208740905, gi... - gi\|208820782\|ref\|ZP_03261102.1\| hydrolase, NUDIX family [Escherichia coli O157:H7 str. EC4042], gi\|2... gi\|209160313, gi... - gi\|209398913\|ref\|YP_002272513.1\| hydrolase, NUDIX family [Escherichia coli O157:H7 str. EC4115], gi\|... gi\|209920506, gi... - gi\|209920506\|ref\|YP_002294590.1\| ADP-ribose pyrophosphatase NudF [Escherichia coli SE11], gi\|2099137... gi\|215488367, gi... - gi\|215488367\|ref\|YP_002330798.1\| ADP-ribose pyrophosphatase NudF [Escherichia coli O127:H6 str. E234... gi\|194426300, gi... - gi\|194426300\|ref\|ZP_03058855.1\| hydrolase, NUDIX family [Escherichia coli B171], gi\|194415608\|gb\|EDX... gi\|195937181 - gi\|195937181\|ref\|ZP_03082563.1\| ADP-ribose pyrophosphatase NudF [Escherichia coli O157:H7 str. EC402... gi\|208727481, gi... - gi\|208807680\|ref\|ZP_03250017.1\| hydrolase, NUDIX family [Escherichia coli O157:H7 str. EC4206], gi\|2... gi\|208733490, gi... - gi\|208812213\|ref\|ZP_03253542.1\| hydrolase, NUDIX family [Escherichia coli O157:H7 str. EC4045], gi\|2... gi\|30042641, gi\|... - gi\|30064384\|ref\|NP_838555.1\| ADP-ribose pyrophosphatase NudF [Shigella flexneri 2a str. 2457T], gi\|3... ADPP_ECOL6 - ADP-ribose pyrophosphatase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=nudF PE... gi\|12517612, gi\|... - gi\|15803581\|ref\|NP_289614.1\| ADP-ribose pyrophosphatase NudF [Escherichia coli O157:H7 EDL933], gi\|1... EG12184 - ADP-ribose pyrophosphatase / ADP-sugar pyrophosphatase; sole ADP-glucose hydrolase, activity limits ... gi\|157079680, gi... - gi\|157157650\|ref\|YP_001464495.1\| ADP-ribose pyrophosphatase NudF [Escherichia coli E24377A], gi\|1570... EG12184 - ADP-ribose pyrophosphatase / ADP-sugar pyrophosphatase; sole ADP-glucose hydrolase, activity limits ... gi\|238902147, gi... - gi\|238902147\|ref\|YP_002927943.1\| ADP-ribose pyrophosphatase [Escherichia coli BW2952], gi\|238859944\|... gi\|242378586, gi... - gi\|251786313\|ref\|YP_003000617.1\| hypothetical protein B21_02856 [Escherichia coli BL21], gi\|24237858... gi\|227835149, gi... - gi\|227887753\|ref\|ZP_04005558.1\| ADP-ribose pyrophosphatase NudF [Escherichia coli 83972], gi\|2278351... gi\|226899247, gi... - gi\|237706207\|ref\|ZP_04536688.1\| ADP-ribose pyrophosphatase NudF [Escherichia sp. 3_2_53FAA], gi\|2268... gi\|170683347, gi... - gi\|170683347\|ref\|YP_001745308.1\| NUDIX family hydrolase [Escherichia coli SMS-3-5], gi\|170521065\|gb\|... gi\|254594391, gi... - gi\|254794991\|ref\|YP_003079828.1\| ADP-ribose pyrophosphatase [Escherichia coli O157:H7 str. TW14359],... gi\|190902382, gi... - gi\|191167525\|ref\|ZP_03029337.1\| hydrolase, NUDIX family [Escherichia coli B7A], gi\|190902382\|gb\|EDV6... gi\|191172513, gi... - gi\|191172513\|ref\|ZP_03034053.1\| hydrolase, NUDIX family [Escherichia coli F11], gi\|190907181\|gb\|EDV6... gi\|254289733, gi... - gi\|254289733\|ref\|YP_003055481.1\| ADP-ribose pyrophosphatase [Escherichia coli BL21(DE3)], gi\|2539790... gi\|192932285, gi... - gi\|193062065\|ref\|ZP_03043161.1\| hydrolase, NUDIX family [Escherichia coli E22], gi\|192932285\|gb\|EDV8... gi\|253974884, gi... - gi\|254162983\|ref\|YP_003046091.1\| ADP-ribose pyrophosphatase [Escherichia coli B str. REL606], gi\|253... gi\|189000564, gi... - gi\|189000564\|gb\|EDU69550.1\| hydrolase, NUDIX family [Escherichia coli O157:H7 str. EC4076], gi\|16878... gi\|168785909, gi... - gi\|189373899\|gb\|EDU92315.1\| hydrolase, NUDIX family [Escherichia coli O157:H7 str. EC869], gi\|168785... gi\|189379850, gi... - gi\|189379850\|gb\|EDU98266.1\| hydrolase, NUDIX family [Escherichia coli O157:H7 str. EC508], gi\|168797... gi\|170082577, gi... - gi\|170082577\|ref\|YP_001731897.1\| ADP-ribose pyrophosphatase [Escherichia coli str. K-12 substr. DH10... gi\|115514472, gi... - gi\|117625348\|ref\|YP_854822.1\| ADP-ribose pyrophosphatase NudF [Escherichia coli APEC O1], gi\|1155144... gi\|189358718, gi... - gi\|189358718\|gb\|EDU77137.1\| hydrolase, NUDIX family [Escherichia coli O157:H7 str. EC4401], gi\|16875... gi\|189369386, gi... - gi\|189369386\|gb\|EDU87802.1\| hydrolase, NUDIX family [Escherichia coli O157:H7 str. EC4501], gi\|16876... gi\|189363701, gi... - gi\|189363701\|gb\|EDU82120.1\| hydrolase, NUDIX family [Escherichia coli O157:H7 str. EC4486], gi\|16876... gi\|187770969, gi... - gi\|187770969\|gb\|EDU34813.1\| hydrolase, NUDIX family [Escherichia coli O157:H7 str. EC4196], gi\|16877... gi\|188017798, gi... - gi\|188017798\|gb\|EDU55920.1\| hydrolase, NUDIX family [Escherichia coli O157:H7 str. EC4113], gi\|16874...	1.0E-41	[1..208]	[1..208]
gi\|14627087 - gi\|14627087\|emb\|CAC44036.1\| adenosine diphosphate sugar pyrophosphatase [Escherichia coli] gi\|14627087\|emb\|... - adenosine diphosphate sugar pyrophosphatase [Escherichia coli]	1.0E-41	[1..208]	[1..208]
gi\|238793659, gi... - gi\|77978331\|ref\|ZP_00833762.1\| COG0494: NTP pyrophosphohydrolases including oxidative damage repair ...	3.0E-41	[1..209]	[1..209]
gi\|82545291, gi\|... - gi\|82545291\|ref\|YP_409238.1\| ADP-ribose pyrophosphatase NudF [Shigella boydii Sb227], gi\|81246702\|gb...	3.0E-41	[1..208]	[1..208]
gi\|86148727, gi\|... - gi\|86148727\|ref\|ZP_01067002.1\| MutT/nudix family protein [Vibrio sp. MED222], gi\|85833476\|gb\|EAQ5165...	4.0E-41	[1..208]	[1..207]

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Predicted Domain #1

Region A:
Residues: [1-210]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRKSDNLPVT FTKSDVEIIA RETRYRGFFS LDVYRFRHRL FNGEMSGEVK REIFERGHAA  60
   61 VLLPFDPERD EVVLVEQIRI AAYDTSVTPW LLEMVAGMIE EGETIEAVAR REAMEEAGLT 120
  121 VGRTRPVISY LASPGGTSER SSILVGEVDA TTAVGIHGLA DENEDIRVHV VSREQAYQWV 180
  181 EEGKIDNAAA VIALQWLQLH HQELKNEWKK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	43.09691
Match:	1g0sA
Description:	ADP-ribose pyrophosphatase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.49075808737475	bayes_pls_golite062009
hydrolase activity	1.0879699007552	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides	0.859040726089354	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	0.859001295204634	bayes_pls_golite062009
pyrophosphatase activity	0.231401568856773	bayes_pls_golite062009
binding	0.165092558977235	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: