YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|208967498
Organism:	synthetic construct
Length:	149 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|208967498.

Description	E-value	Query Range	Subject Range
gi\|108999807 - gi\|108999807\|ref\|XP_001114361.1\| PREDICTED: similar to Stathmin (Phosphoprotein p19) (pp19) (Oncopro...	3.0E-31	[1..149]	[260..408]
gi\|50745196 - gi\|50745196\|ref\|XP_420017.1\| PREDICTED: similar to Stathmin 4 (Stathmin-like protein B3) (RB3) [Gall...	3.0E-25	[3..143]	[150..290]
STMN1_RAT - Stathmin OS=Rattus norvegicus GN=Stmn1 PE=1 SV=2	6.0E-22	[1..149]	[1..149]
gi\|60654325 - gi\|60654325\|gb\|AAX29853.1\| stathmin 1/oncoprotein 18 [synthetic construct]	8.0E-22	[1..149]	[1..149]
gi\|15680064 - gi\|15680064\|gb\|AAH14353.1\| Stathmin 1/oncoprotein 18 [Homo sapiens] gi\|117644474, gi... - gi\|61363614\|gb\|AAX42418.1\| stathmin 1/oncoprotein 18 [synthetic construct], gi\|117644474\|emb\|CAL3773...	8.0E-22	[1..149]	[1..149]
STMN1_MOUSE - Stathmin OS=Mus musculus GN=Stmn1 PE=1 SV=2	9.0E-22	[1..149]	[1..149]

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Predicted Domain #1

Region A:
Residues: [1-149]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASSDIQVKE LEKRASGQAF ELILSPRSKE SVPEFPLSPP KKKDLSLEEI QKKLEAAEER  60
   61 RKSHEAEVLK QLAEKREHEK EVLQKAIEEN NNFSKMAEEK LTHKMEANKE NREAQMAAKL 120
  121 ERLREKDKHI EEVRKNKESK DPADETEAD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	20.0
Match:	1sa1E
Description:	TUBULIN-PODOPHYLLOTOXIN: STATHMIN-LIKE DOMAIN COMPLEX
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
tubulin binding	3.65496915008945	bayes_pls_golite062009
cytoskeletal protein binding	2.89666448608274	bayes_pls_golite062009
microtubule binding	2.64117962157109	bayes_pls_golite062009
protein binding	2.51615225301602	bayes_pls_golite062009
binding	2.01491607652085	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: