YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|204320017, gi...
Organism:	Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433
Length:	228 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|204320017, gi....

Description	E-value	Query Range	Subject Range
EG12866 - RNA chaperone, putative ProP translation regulator / RNA chaperone, probable regulator of ProP trans... PROQ_ECOLI - ProP effector - Escherichia coli PROQ_ECODH - RNA chaperone ProQ OS=Escherichia coli (strain K12 / DH10B) GN=proQ PE=3 SV=1 EG12866 - RNA chaperone, putative ProP translation regulator / RNA chaperone, probable regulator of ProP trans... PROQ_ECOBW - RNA chaperone ProQ OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=proQ PE=3 SV=1 gi\|85675139, gi\|... - gi\|89108671\|ref\|AP_002451.1\| predicted structural transport element [Escherichia coli str. K-12 subs...	3.0E-72	[1..228]	[1..232]
PROQ_ECO24 - RNA chaperone ProQ OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=proQ PE=3 SV=1	7.0E-72	[1..228]	[1..232]
sp\|B7USK8\|PROQ_ECO27 - ProP effector OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=proQ PE=3 SV=1 PROQ_ECOK1 - RNA chaperone ProQ OS=Escherichia coli O1:K1 / APEC GN=proQ PE=3 SV=1 PROQ_ECOL6 - ProP effector OS=Escherichia coli O6 GN=proQ PE=3 SV=1 gi\|75239748, gi\|... - gi\|75239748\|ref\|ZP_00723711.1\| COG3109: Activator of osmoprotectant transporter ProP [Escherichia co... PROQ_ECOUT - RNA chaperone ProQ OS=Escherichia coli (strain UTI89 / UPEC) GN=proQ PE=3 SV=1 PROQ_ECOL5 - RNA chaperone ProQ OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=proQ PE=3 SV=1 PROQ_ECOL6 - RNA chaperone ProQ OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=proQ PE=3 SV=1 PROQ_ECO27 - RNA chaperone ProQ OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=proQ PE=3 SV=1 PROQ_ECO45 - RNA chaperone ProQ OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=proQ PE=3 SV=1 gi\|227837315, gi... - gi\|227885742\|ref\|ZP_04003547.1\| solute/DNA competence effector [Escherichia coli 83972], gi\|22783731... PROQ_ECO81 - RNA chaperone ProQ OS=Escherichia coli O81 (strain ED1a) GN=proQ PE=3 SV=1	1.0E-71	[1..228]	[1..232]
PROQ_SHISS - RNA chaperone ProQ OS=Shigella sonnei (strain Ss046) GN=proQ PE=3 SV=1 PROQ_SHIBS - RNA chaperone ProQ OS=Shigella boydii serotype 4 (strain Sb227) GN=proQ PE=3 SV=1 gi\|191168514, gi... - gi\|75228315\|ref\|ZP_00714967.1\| COG3109: Activator of osmoprotectant transporter ProP [Escherichia co... gi\|188492341, gi... - gi\|75511136\|ref\|ZP_00733859.1\| COG3109: Activator of osmoprotectant transporter ProP [Escherichia co... gi\|124530975, gi... - gi\|124530975\|ref\|ZP_01701431.1\| ProQ activator of osmoprotectant transporter ProP [Escherichia coli ... PROQ_ECOLC - RNA chaperone ProQ OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=proQ PE=3 SV=1 gi\|24112778, gi\|... - ref\|NP_707288.1\| Activator of ProP osmoprotectant transporter [Shigella flexneri 2a str. 301], gb\|A... PROQ_SHIFL - RNA chaperone ProQ OS=Shigella flexneri GN=proQ PE=3 SV=1 gi\|194434518, gi... - gi\|83569083\|ref\|ZP_00920544.1\| COG3109: Activator of osmoprotectant transporter ProP [Shigella dysen... PROQ_ECOHS - RNA chaperone ProQ OS=Escherichia coli O9:H4 (strain HS) GN=proQ PE=3 SV=1 gi\|242377552, gi... - gi\|251785279\|ref\|YP_002999583.1\| hypothetical protein B21_01790 [Escherichia coli BL21], gi\|24237755... gi\|253773214, gi... - gi\|254288679\|ref\|YP_003054427.1\| putative solute/DNA competence effector [Escherichia coli BL21(DE3)... gi\|253973792, gi... - gi\|254161891\|ref\|YP_003044999.1\| putative solute/DNA competence effector [Escherichia coli B str. RE... PROQ_ECOSE - RNA chaperone ProQ OS=Escherichia coli (strain SE11) GN=proQ PE=3 SV=1 PROQ_ECOSM - RNA chaperone ProQ OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=proQ PE=3 SV=1 PROQ_ECOLU - RNA chaperone ProQ OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=proQ PE=3 SV=1 PROQ_ECO55 - RNA chaperone ProQ OS=Escherichia coli (strain 55989 / EAEC) GN=proQ PE=3 SV=1	1.0E-71	[1..228]	[1..232]
PROQ_SHIB3 - RNA chaperone ProQ OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=proQ PE=3 SV=1	1.0E-71	[1..228]	[1..232]
PROQ_SHIF8 - RNA chaperone ProQ OS=Shigella flexneri serotype 5b (strain 8401) GN=proQ PE=3 SV=1	2.0E-71	[1..228]	[1..232]
gi\|168802392, gi... - gi\|189375614\|gb\|EDU94030.1\| ProP effector [Escherichia coli O157:H7 str. EC508], gi\|168802392\|ref\|ZP... gi\|195939732 - gi\|195939732\|ref\|ZP_03085114.1\| putative solute/DNA competence effector [Escherichia coli O157:H7 st... gi\|208725251, gi... - gi\|208810735\|ref\|ZP_03252611.1\| ProP effector [Escherichia coli O157:H7 str. EC4206], gi\|208725251\|g... gi\|208731085, gi... - gi\|208816742\|ref\|ZP_03257862.1\| ProP effector [Escherichia coli O157:H7 str. EC4045], gi\|208731085\|g... PROQ_SHIDS - RNA chaperone ProQ OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=proQ PE=3 SV=1 gi\|208739003, gi... - gi\|208818880\|ref\|ZP_03259200.1\| ProP effector [Escherichia coli O157:H7 str. EC4042], gi\|208739003\|g... gi\|192956790, gi... - gi\|75235365\|ref\|ZP_00719591.1\| COG3109: Activator of osmoprotectant transporter ProP [Escherichia co... PROQ_ECO5E - RNA chaperone ProQ OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=proQ PE=3 SV=1 gi\|217318037, gi... - gi\|217328690\|ref\|ZP_03444771.1\| ProP effector [Escherichia coli O157:H7 str. TW14588], gi\|217318037\|... gi\|254592855, gi... - gi\|254793455\|ref\|YP_003078292.1\| predicted structural transport element [Escherichia coli O157:H7 st... PROQ_ECO57 - RNA chaperone ProQ OS=Escherichia coli O157:H7 GN=proQ PE=3 SV=1 gi\|168752081, gi... - gi\|188013972\|gb\|EDU52094.1\| ProP effector [Escherichia coli O157:H7 str. EC4113], gi\|168752081\|ref\|Z... gi\|168758590, gi... - gi\|189354611\|gb\|EDU73030.1\| ProP effector [Escherichia coli O157:H7 str. EC4401], gi\|168758590\|ref\|Z... gi\|168762377, gi... - gi\|189367405\|gb\|EDU85821.1\| ProP effector [Escherichia coli O157:H7 str. EC4501], gi\|168762377\|ref\|Z... gi\|187767052, gi... - gi\|187767052\|gb\|EDU30896.1\| ProP effector [Escherichia coli O157:H7 str. EC4196], gi\|168777775\|ref\|Z... gi\|188999437, gi... - gi\|188999437\|gb\|EDU68423.1\| ProP effector [Escherichia coli O157:H7 str. EC4076], gi\|168783129\|ref\|Z... gi\|168788249, gi... - gi\|189371976\|gb\|EDU90392.1\| ProP effector [Escherichia coli O157:H7 str. EC869], gi\|168788249\|ref\|ZP... gi\|15831795, gi\|... - gi\|15831795\|ref\|NP_310568.1\| putative solute/DNA competence effector [Escherichia coli O157:H7 str. ... gi\|15804984 - gi\|15804984\|ref\|NP_288268.1\| putative solute/DNA competence effector [Escherichia coli O157:H7 EDL93... gi\|209767768, gi... - pir\|\|E90946 ProP effector [imported] - Escherichia coli (strain O157:H7, substrain RIMD 0509952), gi...	3.0E-71	[1..228]	[1..232]
gi\|238728853, gi... - gi\|77980100\|ref\|ZP_00835515.1\| COG3109: Activator of osmoprotectant transporter ProP [Yersinia inter...	3.0E-67	[1..228]	[1..237]
PROQ_YERPE - RNA chaperone ProQ OS=Yersinia pestis GN=proQ PE=3 SV=1 gi\|229689426, gi... - gi\|229843818\|ref\|ZP_04463961.1\| ProP effector [Yersinia pestis biovar Orientalis str. India 195], gi... gi\|229702423, gi... - gi\|229894668\|ref\|ZP_04509849.1\| ProP effector [Yersinia pestis Pestoides A], gi\|229702423\|gb\|EEO9044... gi\|229693415, gi... - gi\|229897078\|ref\|ZP_04512234.1\| ProP effector [Yersinia pestis biovar Orientalis str. PEXU2], gi\|229... PROQ_YERPB - RNA chaperone ProQ OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=proQ PE=3 SV=1 PROQ_YERPA - RNA chaperone ProQ OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=proQ PE=3 SV=1 PROQ_YERPN - RNA chaperone ProQ OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=proQ PE=3 SV=1 PROQ_YERPG - RNA chaperone ProQ OS=Yersinia pestis bv. Antiqua (strain Angola) GN=proQ PE=3 SV=1 gi\|165922629, gi... - gi\|165925520\|ref\|ZP_02221352.1\| ProP effector [Yersinia pestis biovar Orientalis str. F1991016], gi\|... PROQ_YERP3 - RNA chaperone ProQ OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=proQ PE=3 SV=1 gi\|45441541, gi\|... - gi\|45441541\|ref\|NP_993080.1\| putative solute/DNA competence effector [Yersinia pestis biovar Microtu... gi\|165992589, gi... - gi\|166008207\|ref\|ZP_02229105.1\| ProP effector [Yersinia pestis biovar Antiqua str. E1979001], gi\|165... gi\|22125759, gi\|... - gi\|22125759\|ref\|NP_669182.1\| putative solute/DNA competence effector [Yersinia pestis KIM], gi\|21958... gi\|149290715, gi... - gi\|149366341\|ref\|ZP_01888375.1\| osmoregulatory protein [Yersinia pestis CA88-4125], gi\|149290715\|gb\|... gi\|165938476, gi... - gi\|165938476\|ref\|ZP_02227033.1\| ProP effector [Yersinia pestis biovar Orientalis str. IP275], gi\|165... gi\|218928832, gi... - gi\|218928832\|ref\|YP_002346707.1\| putative solute/DNA competence effector [Yersinia pestis CO92], gi\|... PROQ_YERPP - RNA chaperone ProQ OS=Yersinia pestis (strain Pestoides F) GN=proQ PE=3 SV=1 gi\|167048900, gi... - gi\|167401795\|ref\|ZP_02307286.1\| ProP effector [Yersinia pestis biovar Antiqua str. UG05-0454], gi\|16... PROQ_YERPS - RNA chaperone ProQ OS=Yersinia pseudotuberculosis serotype I (strain IP32953) GN=proQ PE=3 SV=1 PROQ_YERPS - ProP effector OS=Yersinia pseudotuberculosis GN=proQ PE=3 SV=1 gi\|166210503, gi... - gi\|166210503\|ref\|ZP_02236538.1\| ProP effector [Yersinia pestis biovar Antiqua str. B42003004], gi\|16... PROQ_YERPY - RNA chaperone ProQ OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=proQ PE=3 SV=1 gi\|166958453, gi... - gi\|167422606\|ref\|ZP_02314359.1\| ProP effector [Yersinia pestis biovar Orientalis str. MG05-1020], gi...	9.0E-67	[1..228]	[1..237]
gi\|77959122, gi\|... - gi\|77959122\|ref\|ZP_00823145.1\| COG3109: Activator of osmoprotectant transporter ProP [Yersinia berco...	9.0E-67	[1..228]	[1..237]

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Predicted Domain #1

Region A:
Residues: [1-136]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MENQPKLNSS KEVIAFLAER FPHCFSAEGE ARPLKIGIFQ DLVERVGGEM NLSKTQLRSA  60
   61 LRLYTSSWRY LYGVKPGATR VDLDGNPCGE LEEQHVEHAR KQLEEAKARV QAQRAEQQAK 120
  121 KREAAAAAGE KEDAPR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	29.69897
Match:	1dvoA
Description:	Repressor of bacterial conjugation FinO
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [137-228]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RERKPRPVAR RKEGAERKPR ADKPTTKAPR APREEKHTPV SDISVLTVGQ SLKVKAGNNA  60
   61 MDATVLEITK DGVRVQLNSG MSLIVRAEHL VF

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.553	0.001	cytoplasm	g.41.5	Rubredoxin-like
View	Download	0.576	N/A	N/A	b.61.2	Metalloprotease inhibitor
View	Download	0.571	N/A	N/A	b.61.4	Quinohemoprotein amine dehydrogenase A chain, domain 3
View	Download	0.561	N/A	N/A	b.61.2	Metalloprotease inhibitor
View	Download	0.537	N/A	N/A	b.61.2	Metalloprotease inhibitor

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits