YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|40889058, gi\|...
Organism:	Homo sapiens
Length:	240 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|40889058, gi|....

Description	E-value	Query Range	Subject Range
gi\|73984164 - gi\|73984164\|ref\|XP_540996.2\| PREDICTED: similar to translin [Canis familiaris]	301.0	[0..11]	[240..385]
gi\|21730462, gi\|... - gi\|21730462\|pdb\|1KEY\|D Chain D, Crystal Structure Of Mouse TestisBRAIN RNA-Binding Protein (Tb-Rbp),...	277.0	[0..11]	[240..6]
TSN_PONAB - Translin OS=Pongo abelii GN=TSN PE=2 SV=1 TSN_PONPY - Translin - Pongo pygmaeus (Orangutan)	275.0	[0..13]	[240..1]
gi\|62901900 - gi\|62901900\|gb\|AAY18901.1\| translin [synthetic construct]	275.0	[0..13]	[240..25]
TSN_CRIGR - Translin OS=Cricetulus griseus GN=TSN PE=2 SV=1 gi\|9652067, gi\|1... - gi\|9652067\|gb\|AAF91387.1\|AF262356_1 translin [Rattus norvegicus], gi\|149033085\|gb\|EDL87903.1\| transl...	275.0	[0..13]	[240..1]
gi\|209364554 - gi\|209364554\|ref\|NP_001128876.2\| translin protein [Pongo abelii] gi\|55608816 - gi\|55608816\|ref\|XP_515770.1\| PREDICTED: similar to Chain A, Crystal Structure Of Human Translin isof... gi\|61357608, gi\|... - gi\|61357608\|gb\|AAX41414.1\| translin [synthetic construct], gi\|61357603\|gb\|AAX41413.1\| translin [synt... TSN - translin gi\|109104493 - gi\|109104493\|ref\|XP_001085908.1\| PREDICTED: similar to translin [Macaca mulatta]	275.0	[0..13]	[240..1]
gi\|55736031 - gi\|55736031\|gb\|AAV63542.1\| fed tick salivary protein 8 [Ixodes scapularis]	274.0	[0..12]	[237..2]
gi\|149755302 - gi\|149755302\|ref\|XP_001489458.1\| PREDICTED: similar to translin [Equus caballus] TSN_BOVIN - Translin OS=Bos taurus GN=TSN PE=2 SV=1	273.0	[0..13]	[240..1]

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Predicted Domain #1

Region A:
Residues: [1-240]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRGSHHHHHH GSMSVSEIFV ELQGFLAAEQ DIREEIRKVV QSLEQTAREI LTLLQGVHQG  60
   61 AGFQDIPKRC LKAREHFGTV KTHLTSLKTK FPAEQYYRFH EHWRFVLQRL VFLAAFVVYL 120
  121 ETETLVTREA VTEILGIEPD REKGFHLDVE DYLSGVLILA SELSRLSVNS VTAGDYSRPL 180
  181 HISTFINELD SGFRLLNLKN DSLRKRYDGL KYDVKKVEEV VYDLSIRGFN KETAAACVEK 240
  241

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	77.154902
Match:	1j1jA
Description:	Crystal Structure of human Translin
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
nucleic acid binding	2.3188629697616	bayes_pls_golite062009
binding	1.94480454487356	bayes_pls_golite062009
DNA binding	1.58937601934226	bayes_pls_golite062009
structure-specific DNA binding	1.56664100418006	bayes_pls_golite062009
single-stranded DNA binding	1.3845125644471	bayes_pls_golite062009
RNA binding	0.41002712924518	bayes_pls_golite062009
protein binding	0.335015582245911	bayes_pls_golite062009
telomeric DNA binding	0.12832953268809	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: