YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|47168797, gi\|...
Organism:	Escherichia coli
Length:	282 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|47168797, gi|....

Description	E-value	Query Range	Subject Range
gi\|52787935, gi\|... - gi\|52787935\|ref\|YP_093764.1\| YxeH [Bacillus licheniformis ATCC 14580], gi\|52350437\|gb\|AAU43071.1\| Yx...	216.0	[0..3]	[273..12]
gi\|167992424, gi... - gi\|205329366\|gb\|EDZ16130.1\| phosphatase YidA [Salmonella enterica subsp. enterica serovar 4,[5],12:i... gi\|16422404, gi\|... - gi\|16767116\|ref\|NP_462731.1\| sugar phosphatase [Salmonella typhimurium LT2], gi\|16422404\|gb\|AAL22690... lcl\|NC_016856.1_... - [gene=yidA] [protein=sugar phosphatase] [protein_id=YP_005240097.1] [location=complement(4047898..40...	214.0	[0..3]	[273..1]
gi\|224585630, gi... - gi\|224585630\|ref\|YP_002639429.1\| hypothetical protein SPC_3918 [Salmonella enterica subsp. enterica ... gi\|206710860, gi... - gi\|207859057\|ref\|YP_002245708.1\| sugar phosphatase [Salmonella enterica subsp. enterica serovar Ente... gi\|197241280, gi... - gi\|197263025\|ref\|ZP_03163099.1\| phosphatase YidA [Salmonella enterica subsp. enterica serovar Saintp... gi\|194403742, gi... - gi\|194445079\|ref\|YP_002043081.1\| phosphatase YidA [Salmonella enterica subsp. enterica serovar Newpo... gi\|168260385, gi... - gi\|205350165\|gb\|EDZ36796.1\| phosphatase YidA [Salmonella enterica subsp. enterica serovar Hadar str.... gi\|62182319, gi\|... - gi\|62182319\|ref\|YP_218736.1\| sugar phosphatase [Salmonella enterica subsp. enterica serovar Cholerae... gi\|205325651, gi... - gi\|205325651\|gb\|EDZ13490.1\| phosphatase YidA [Salmonella enterica subsp. enterica serovar Saintpaul ... gi\|161616948, gi... - gi\|161616948\|ref\|YP_001590913.1\| sugar phosphatase [Salmonella enterica subsp. enterica serovar Para...	214.0	[0..3]	[273..1]
gi\|224502434 - gi\|224502434\|ref\|ZP_03670741.1\| hypothetical protein LmonFR_07924 [Listeria monocytogenes FSL R2-561... gi\|16802318 - gi\|16802318\|ref\|NP_463803.1\| hypothetical protein lmo0272 [Listeria monocytogenes EGD-e] gi\|16409637, gi\|... - pir\|\|AI1108 B. subtilis YxeH protein homolog lmo0272 [imported] - Listeria monocytogenes (strain EGD...	214.0	[0..4]	[273..1]
gi\|16799375 - gi\|16799375\|ref\|NP_469643.1\| hypothetical protein lin0298 [Listeria innocua Clip11262] gi\|25303672, gi\|... - pir\|\|AC1470 conserved hypothetical protein B. subtilis YxeH protein homolog lin0298 [imported] - Lis...	213.0	[0..4]	[273..1]
gi\|47096361, gi\|... - gi\|47096361\|ref\|ZP_00233956.1\| hydrolase, haloacid dehalogenase-like family [Listeria monocytogenes ... gi\|254900539, gi... - gi\|254900539\|ref\|ZP_05260463.1\| hypothetical protein LmonJ_12014 [Listeria monocytogenes J0161], gi\|... gi\|254937909, gi... - gi\|254937909\|ref\|ZP_05269606.1\| hypothetical protein LmonF6_12304 [Listeria monocytogenes F6900], gi... gi\|127766706, gi... - gi\|254913510\|ref\|ZP_05263522.1\| hypothetical protein LmonJ2_11964 [Listeria monocytogenes J2818], gi...	213.0	[0..4]	[273..1]
gi\|46906513, gi\|... - gi\|46906513\|ref\|YP_012902.1\| HAD superfamily hydrolase [Listeria monocytogenes str. 4b F2365], gi\|46... gi\|47020086, gi\|... - gi\|47091409\|ref\|ZP_00229206.1\| hydrolase, haloacid dehalogenase-like family [Listeria monocytogenes ... gi\|133736481, gi... - gi\|254932499\|ref\|ZP_05265858.1\| hypothetical protein LmonH_08708 [Listeria monocytogenes HPB2262], g... gi\|254825676 - gi\|254825676\|ref\|ZP_05230677.1\| hypothetical protein LmonFS_10939 [Listeria monocytogenes FSL J1-194... gi\|226222908, gi... - gi\|226222908\|ref\|YP_002757015.1\| hypothetical protein Lm4b_00300 [Listeria monocytogenes Clip81459],... gi\|255520774 - gi\|255520774\|ref\|ZP_05388011.1\| hypothetical protein LmonocFSL_06026 [Listeria monocytogenes FSL J1-... gi\|254993193 - gi\|254993193\|ref\|ZP_05275383.1\| hypothetical protein LmonocytoFSL_09283 [Listeria monocytogenes FSL ...	213.0	[0..4]	[273..1]
gi\|221316252 - gi\|221316252\|ref\|ZP_03598057.1\| hypothetical protein BsubsN3_21247 [Bacillus subtilis subsp. subtili... YXEH_BACSU - Putative phosphatase YxeH OS=Bacillus subtilis (strain 168) GN=yxeH PE=3 SV=1 YXEH_BACSU - Uncharacterized protein YxeH OS=Bacillus subtilis GN=yxeH PE=3 SV=1 gi\|221321164 - gi\|221321164\|ref\|ZP_03602458.1\| hypothetical protein BsubsJ_21195 [Bacillus subtilis subsp. subtilis... gi\|221325448 - gi\|221325448\|ref\|ZP_03606742.1\| hypothetical protein BsubsS_21346 [Bacillus subtilis subsp. subtilis...	211.0	[0..4]	[273..1]
gi\|22127977, gi\|... - gi\|22127977\|ref\|NP_671400.1\| sugar phosphatase [Yersinia pestis KIM], gi\|21961122\|gb\|AAM87651.1\|AE01... gi\|45443724, gi\|... - gi\|45443724\|ref\|NP_995263.1\| sugar phosphatase [Yersinia pestis biovar Microtus str. 91001], gi\|4543...	211.0	[0..3]	[270..28]

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Predicted Domain #1

Region A:
Residues: [1-282]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLAIKLIAI DMDGTLLLPD HTISPAVKNA IAAARARGVN VVLTTGRPYA GVHNYLKELH  60
   61 MEQPGDYCIT YNGALVQKAA DGSTVAQTAL SYDDYRFLEK LSREVGSHFH ALDRTTLYTA 120
  121 NRDISYYTVH ESFVATIPLV FCEAEKMDPN TQFLKVMMID EPAILDQAIA RIPQEVKEKY 180
  181 TVLKSAPYFL EILDKRVNKG TGVKSLADVL GIKPEEIMAI GDQENDIAMI EYAGVGVAVD 240
  241 NAIPSVKEVA NFVTKSNLED GVAFAIEKYV LNEGGSHHHH HH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	55.30103
Match:	1rkqA
Description:	Crystal structure of NYSGRC target T1436: A Hypothetical protein yidA.
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.55296860681783	bayes_pls_golite062009
hydrolase activity	0.996930438913923	bayes_pls_golite062009
phosphatase activity	0.0985887286442809	bayes_pls_golite062009
phosphoric ester hydrolase activity	0.0342238658800214	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: