YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|47168786, gi\|...
Organism:	Homo sapiens
Length:	182 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|47168786, gi|....

Description	E-value	Query Range	Subject Range
gi\|74210678 - gi\|74210678\|dbj\|BAE23679.1\| unnamed protein product [Mus musculus]	169.0	[0..2]	[181..28]
gi\|15281515 - gi\|15281515\|gb\|AAK94293.1\|AF364047_1 Roundabout1 protein [Gallus gallus]	167.0	[0..2]	[181..22]
ROBO1_RAT - Roundabout homolog 1 OS=Rattus norvegicus GN=Robo1 PE=1 SV=1	164.0	[0..2]	[181..67]
gi\|74001211 - gi\|74001211\|ref\|XP_544814.2\| PREDICTED: similar to roundabout 1 isoform a [Canis familiaris]	164.0	[0..2]	[181..118]
gi\|85662652 - gi\|85662652\|gb\|AAI12337.1\| ROBO1 protein [Homo sapiens]	163.0	[0..2]	[181..28]

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Predicted Domain #1

Region A:
Residues: [1-182]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AGLKLMGAPV KLTVSQGQPV KLNCSVEGXE EPDIQWVKDG AVVQNLDQLY IPVSEQHWIG  60
   61 FLSLKSVERS DAGRYWCQVE DGGETEISQP VWLTVEGVPF FTVEPKDLAV PPNAPFQLSC 120
  121 EAVGPPEPVT IVWWRGTTKI GGPAPSPSVL NVTGVTQSTX FSCEAHNLKG LASSRTATVH 180
  181 LQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	31.522879
Match:	1rhfA
Description:	Crystal Structure of human Tyro3-D1D2
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.483195558859675	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: