YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|31615767, gi\|...
Organism:	Homo sapiens
Length:	77 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|31615767, gi|....

Description	E-value	Query Range	Subject Range
gi\|208138 - gi\|208138\|gb\|AAA73218.1\| Col-CTAP-III(Leu21) fusion protein [unidentified cloning vector]	100.0	[0..6]	[76..523]
gi\|45384324, gi\|... - gi\|9280593\|gb\|AAF86485.1\| CXC chemokine K60 [Gallus gallus], gi\|45384324\|ref\|NP_990349.1\| interleuki...	100.0	[0..4]	[76..29]
gi\|111036708, gi... - gi\|111036708\|dbj\|BAF02384.1\| interleukin-8 [Anas platyrhynchos], gi\|111036706\|dbj\|BAF02383.1\| interl...	100.0	[0..1]	[73..25]
gi\|83016753, gi\|... - gi\|83016753\|dbj\|BAE53442.1\| Interleukin-8 [Anser cygnoides], gi\|156138762\|dbj\|BAF75873.1\| interleuki... gi\|88702700 - gi\|88702700\|gb\|ABD49205.1\| IL-8 [Anser anser]	99.0	[0..1]	[73..25]
gi\|55741690 - ref\|NP_001003200.1\| interleukin 8 [Canis familiaris] IL8_CANLF - Interleukin-8 OS=Canis lupus familiaris GN=CXCL8 PE=3 SV=1	99.0	[0..3]	[77..28]
gi\|30016905 - gi\|30016905\|gb\|AAP03703.1\| interferon g inducible protein 10/scFv single chain antibody fusion prote...	98.0	[0..1]	[77..22]
gi\|156753153 - gi\|156753153\|gb\|ABU94273.1\| interleukin 8 [Ovis canadensis] IL8_SHEEP - Interleukin-8 OS=Ovis aries GN=CXCL8 PE=3 SV=1	98.0	[0..3]	[77..28]
IL8_RABIT - Interleukin-8 OS=Oryctolagus cuniculus GN=CXCL8 PE=1 SV=2	97.0	[0..3]	[75..28]

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Predicted Domain #1

Region A:
Residues: [1-77]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VPLSRTVRCT CISISNQPVN PRSLEKLEII PASQFCPRVE IIATMKKKGE KRCLNPESKA  60
   61 IKNLLKAVSK EMSKRSP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	15.522879
Match:	1lv9A
Description:	IP-10/CXCL10
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	1.3900020421144	bayes_pls_golite062009
protein binding	1.08080878723934	bayes_pls_golite062009
receptor binding	0.76867241822245	bayes_pls_golite062009
cytokine activity	0.53309192942479	bayes_pls_golite062009
G-protein-coupled receptor binding	0.32020721127886	bayes_pls_golite062009
chemokine activity	0.26786878228995	bayes_pls_golite062009
chemokine receptor binding	0.26786878228995	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: