YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39654354, gi\|...
Organism:	Homo sapiens
Length:	133 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39654354, gi|....

Description	E-value	Query Range	Subject Range
ATX1_RAT - Ataxin-1 OS=Rattus norvegicus GN=Atxn1 PE=2 SV=1	239.0	[0..1]	[133..535]
ATX1_MOUSE - Ataxin-1 OS=Mus musculus GN=Atxn1 PE=1 SV=2	237.0	[0..1]	[133..537]
gi\|114605595 - gi\|114605595\|ref\|XP_001170170.1\| PREDICTED: ataxin 1 [Pan troglodytes]	222.0	[0..13]	[133..567]
ATXN1 - ataxin 1	222.0	[0..13]	[133..573]
gi\|50733637 - gi\|50733637\|ref\|XP_418934.1\| PREDICTED: similar to Ataxin-1 (Spinocerebellar ataxia type 1 protein h...	221.0	[0..1]	[133..544]
gi\|74004108 - gi\|74004108\|ref\|XP_545354.2\| PREDICTED: similar to Ataxin-1 (Spinocerebellar ataxia type 1 protein) ...	219.0	[0..13]	[133..570]

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Predicted Domain #1

Region A:
Residues: [1-133]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GSPAAAPPTL PPYFMKGSII QLANGELKKV EDLKTEDFIQ SAEISNDLKI DSSTVERIED  60
   61 SHSPGVAVIQ FAVGEHRAQV SVEVLVEYPF FVFGQGWSSC CPERTSQLFD LPCSKLSVGD 120
  121 VCISLTLKNL KNG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	58.30103
Match:	1oa8A
Description:	AXH domain of human spinocerebellar ataxin-1
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits