YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|218769301, gi...
Organism:	Pseudomonas aeruginosa LESB58
Length:	759 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|218769301, gi....

Description	E-value	Query Range	Subject Range
tr\|I7C1M8\|I7C1M8... - PTSINtr with GAF domain, PtsP OS=Pseudomonas putida (strain DOT-T1E) GN=ptsP PE=3 SV=1 gi\|82738262, gi\|... - gi\|82738262\|ref\|ZP_00901098.1\| Phosphoenolpyruvate-protein phosphotransferase [Pseudomonas putida F1... gi\|26991821, gi\|... - gi\|26991821\|ref\|NP_747246.1\| PTSINtr with GAF domain, PtsP [Pseudomonas putida KT2440], gi\|24986935\|...	0.0	[1..755]	[1..755]
gi\|55833080 - gi\|55833080\|gb\|AAV66957.1\| PtsP [Pseudomonas fluorescens]	0.0	[1..755]	[1..755]
gi\|226946828, gi... - gi\|67155494\|ref\|ZP_00417122.1\| Phosphoenolpyruvate-protein phosphotransferase [Azotobacter vinelandi... gi\|67155494, gi\|... - gi\|67155494\|ref\|ZP_00417122.1\| Phosphoenolpyruvate-protein phosphotransferase [Azotobacter vinelandi...	0.0	[1..758]	[1..758]
gi\|95113135, gi\|... - gi\|95113135\|emb\|CAK17863.1\| phosphoenolpyruvate-protein phosphotransferase [Pseudomonas entomophila ... gi\|95113135 - gi\|95113135\|emb\|CAK17863.1\| phosphoenolpyruvate-protein phosphotransferase [Pseudomonas entomophila ...	0.0	[1..757]	[1..757]
gi\|150959901, gi... - gi\|94414829\|ref\|ZP_01294683.1\| hypothetical protein PaerP_01003409 [Pseudomonas aeruginosa PA7], gi\|...	0.0	[1..758]	[1..758]
gi\|61229341 - gi\|61229341\|gb\|AAX40987.1\| phosphoenolpyruvate-protein phosphotransferase [Pseudomonas aeruginosa]	0.0	[1..759]	[1..759]
gi\|3641832 - gi\|3641832\|emb\|CAA74995.1\| enzyme I [Azotobacter vinelandii]	0.0	[1..758]	[1..758]
gi\|68347483, gi\|... - gi\|70733184\|ref\|YP_262957.1\| phosphoenolpyruvate-protein phosphotransferase PtsP [Pseudomonas fluore...	0.0	[1..756]	[1..756]
gi\|77461598, gi\|... - gi\|77461598\|ref\|YP_351105.1\| phosphoenolpyruvate-protein phosphotransferase PtsP [Pseudomonas fluore...	0.0	[1..755]	[1..755]
tr\|Q87UL2\|Q87UL2... - Phosphoenolpyruvate-protein phosphotransferase PtsP OS=Pseudomonas syringae pv. tomato (strain DC300... gi\|213923787, gi... - gi\|213971426\|ref\|ZP_03399539.1\| phosphoenolpyruvate-protein phosphotransferase PtsP [Pseudomonas syr... gi\|28872396, gi\|... - gi\|28872396\|ref\|NP_795015.1\| phosphoenolpyruvate-protein phosphotransferase PtsP [Pseudomonas syring...	0.0	[1..755]	[1..755]

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Predicted Domain #1

Region A:
Residues: [1-195]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLNTLRKIVQ EVNSAKDLKA ALGIIVQRVK EAMGTQVCSV YLLDTETQRF VLMATEGLNK  60
   61 RSIGKVSMAP SEGLVGLVGT REEPLNLENA AAHPRYRYFA ETGEERYASF LGAPIIHHRR 120
  121 VMGVLVVQQK ERRQFDEGEE AFLVTMSAQL AGVIAHAEAT GSIRGLGKLG KGIQEAKFVG 180
  181 VPGAPGVGVG KAVVV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	18.522879
Match:	1mc0A
Description:	3',5'-cyclic nucleotide phosphodiesterase 2A, GAF A and GAF B domains
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
transcription regulator activity	2.29241390329225	bayes_pls_golite062009
binding	2.02315964268807	bayes_pls_golite062009
DNA binding	1.99643127799452	bayes_pls_golite062009
nucleic acid binding	1.93476839291455	bayes_pls_golite062009
transcription factor activity	1.83436761962516	bayes_pls_golite062009
protein binding	0.321233885659081	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [196-759]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LPPADLEVVP DKQVDDIDAE IALFKQALEG VRADMRALSS KLASQLRKEE RALFDVYLMM  60
   61 LDDASIGNEV KRIIRTGQWA QGALRQVVME HVQRFELMDD AYLRERASDV KDIGRRLLAY 120
  121 LQEERKQNLT YPEQTIIVSE ELSPAMLGEV PEGRLVGLVS VLGSGNSHVA ILARAMGIPT 180
  181 VMGAVDLPYS KVDGIDLIVD GYHGEVYTNP SAELVRQYSD VVAEERELSK GLAALRELPC 240
  241 ETLDGHRMPL WVNTGLLADV ARAQERGAEG VGLYRTEVPF MINDRFPSEK EQLAIYREQL 300
  301 SAFHPLPVTM RTLDIGGDKA LSYFPIKEDN PFLGWRGIRV TLDHPEIFLV QTRAMLKASE 360
  361 GLDNLRILLP MISGTHELEE ALHLIHRAWG EVRDEGVDIA MPPIGMMVEI PAAVYQTREL 420
  421 ARQVDFLSVG SNDLTQYLLA VDRNNPRVAD LYDYLHPAVL HALKKVVDDA HLEGKPVSIC 480
  481 GEMAGDPAAA VLLMAMGFDS LSMNATNLPK VKWLLRQITL DKARDLLGQL LTFDNPQVIH 540
  541 SSLHLALRNL GLGRVINPAA TVQP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	146.0
Match:	2hroA
Description:	No description for 2hroA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: