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View Structure Prediction Details

Protein: gi|167421376, gi...
Organism: Yersinia pestis biovar Orientalis str. MG05-1020
Length: 396 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|167421376, gi....

Description E-value Query
Range		 Subject
Range
gi|91188596, gi|... - gi|91227446|ref|ZP_01261810.1| flavohemoprotein (flavohemoglobin) [Vibrio alginolyticus 12G01], gi|9...
 6.0E-73 [1..396] [1..394]
HMP_VIBPA - Flavohemoprotein OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) GN=hmp PE=3 SV=2
HMP_VIBPA - Flavohemoprotein OS=Vibrio parahaemolyticus GN=hmp PE=3 SV=2
 1.0E-72 [1..396] [1..394]
gi|507738 - gi|507738|gb|AAA62190.1| Hmp
 1.0E-72 [1..396] [1..394]
gi|117672868, gi... - gi|77629907|ref|ZP_00792493.1| COG1018: Flavodoxin reductases (ferredoxin-NADPH reductases) family 1...
 6.0E-72 [1..396] [1..396]
gi|75855424, gi|... - gi|75855424|ref|ZP_00763075.1| COG1018: Flavodoxin reductases (ferredoxin-NADPH reductases) family 1...
 8.0E-72 [1..396] [1..394]
gi|90324473, gi|... - gi|90414468|ref|ZP_01222444.1| putative Flavodoxin reductase [Photobacterium profundum 3TCK], gi|903...
 2.0E-71 [1..396] [1..394]
HMP_VIBVU - Flavohemoprotein OS=Vibrio vulnificus GN=hmp PE=3 SV=1
HMP_VIBVU - Flavohemoprotein OS=Vibrio vulnificus (strain CMCP6) GN=hmp PE=3 SV=1
 2.0E-71 [1..396] [1..394]
HMP_VIBVY - Flavohemoprotein OS=Vibrio vulnificus (strain YJ016) GN=hmp PE=3 SV=1
 3.0E-71 [1..396] [1..394]
HMP_RHIME - Flavohemoprotein OS=Rhizobium meliloti GN=hmp PE=3 SV=2
HMP_RHIME - Flavohemoprotein OS=Rhizobium meliloti (strain 1021) GN=hmp PE=3 SV=2
 8.0E-71 [1..392] [1..398]
HMP_DEIRA - Flavohemoprotein OS=Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / ...
HMP_DEIRA - Flavohemoprotein OS=Deinococcus radiodurans GN=hmp PE=3 SV=1
 1.0E-70 [1..394] [1..395]

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Predicted Domain #1
Region A:
Residues: [1-396] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLDTQTIAIV KSTIPLLAAT GPKLTAHFYE RMFKHHPELK NIFNMSNQSS GDQREALFNA  60
   61 ICAYATNIEN LAALLPTVER IAQKHTSLNI QPEHYPIVGE HLIATLDELF SPGQAVLDAW 120
  121 AKAYGVLADV FIQRESQIYQ QSETETGGWR TLRRFRIIKK EQQSEVICSF VLAPEDGGQV 180
  181 LHYKPGQYLG IYIEHESLEF QEIRQYSLTT APNGKTYRIA VKREEQGTVS NLLHRELNEG 240
  241 DIVRIAPPRG DFFLDVSPDT PVALISAGVG QTPMLSMLNT LYSQQHAAPV HWLHAAENGR 300
  301 VHAFADEVSA IAAKMPNLSR HVWYREPDLQ DKHGEDYHSQ GLMDLSSYQW LADDPKRHYY 360
  361 FCGPLPFMQF IGRQLLAQGI APEQIHYECF GPHKVI

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 71.69897
Match: 1gvhA
Description: Flavohemoglobin, N-terminal domain; Flavohemoglobin, central domain; Flavohemoglobin, C-terminal domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
oxygen transporter activity 7.81281381234264 bayes_pls_golite062009
oxygen binding 3.78522064312431 bayes_pls_golite062009
hemoglobin binding 3.17505496298935 bayes_pls_golite062009
transporter activity 2.77225108027137 bayes_pls_golite062009
substrate-specific transporter activity 2.44807175467553 bayes_pls_golite062009
binding 1.56341797572673 bayes_pls_golite062009
catalytic activity 1.45374095556065 bayes_pls_golite062009
hemoglobin alpha binding 1.07662870695556 bayes_pls_golite062009
nitric-oxide synthase activity 0.943011064240739 bayes_pls_golite062009
transferase activity 0.708491789248912 bayes_pls_golite062009
riboflavin synthase activity 0.366634814975673 bayes_pls_golite062009
cofactor binding 0.365255270036622 bayes_pls_golite062009
oxidoreductase activity 0.27336340260908 bayes_pls_golite062009
coenzyme binding 0.270924422726986 bayes_pls_golite062009
protein binding 0.144900113694048 bayes_pls_golite062009
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle