YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|172080665, gi...
Organism:	Bacillus anthracis str. A0174
Length:	374 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|172080665, gi....

Description	E-value	Query Range	Subject Range
gi\|83573545, gi\|... - gi\|83590631\|ref\|YP_430640.1\| Phage integrase [Moorella thermoacetica ATCC 39073], gi\|83573545\|gb\|ABC...	6.0E-64	[4..373]	[12..377]
gi\|125974940, gi... - gi\|67916417\|ref\|ZP_00510128.1\| Phage integrase [Clostridium thermocellum ATCC 27405], gi\|67849610\|gb...	3.0E-61	[1..372]	[1..368]
gi\|158140281, gi... - gi\|158320082\|ref\|YP_001512589.1\| integrase family protein [Alkaliphilus oremlandii OhILAs], gi\|15814...	4.0E-60	[1..373]	[1..368]
gi\|31415821 - gi\|31415821\|ref\|NP_852561.1\| DNA integration/recombination/invertion protein [Bacillus phage phBC6A5... gi\|29896235, gi\|... - gi\|30020683\|ref\|NP_832314.1\| DNA integration/recombination/invertion protein [Bacillus cereus ATCC 1... gi\|228655527, gi... - gi\|229127965\|ref\|ZP_04256949.1\| DNA integration/recombination/invertion protein [Bacillus cereus BDR...	4.0E-60	[1..372]	[1..367]
gi\|241883263, gi... - gi\|241904345\|ref\|ZP_04789046.1\| integrase family protein [Thermoanaerobacter brockii subsp. finnii A... gi\|166857459, gi... - gi\|76796670\|ref\|ZP_00779026.1\| Phage integrase [Thermoanaerobacter ethanolicus ATCC 33223], gi\|76587...	2.0E-59	[1..373]	[1..372]
gi\|57224782, gi\|... - gi\|57234334\|ref\|YP_181609.1\| phage integrase family site specific recombinase [Dehalococcoides ethen...	1.0E-58	[1..374]	[1..381]
gi\|78045014, gi\|... - gi\|78045014\|ref\|YP_360522.1\| prophage LambdaCh01, site-specific recombinase phage integrase family p...	4.0E-58	[1..372]	[1..368]
gi\|89204502, gi\|... - gi\|89204502\|ref\|ZP_01183079.1\| Phage integrase [Bacillus weihenstephanensis KBAB4], gi\|89157563\|gb\|E...	8.0E-58	[2..372]	[4..370]
gi\|68235284, gi\|... - gi\|68235284\|ref\|ZP_00574302.1\| Phage integrase:Phage integrase, N-terminal SAM-like [Frankia sp. EAN...	5.0E-57	[4..373]	[94..458]

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Predicted Domain #1

Region A:
Residues: [1-374]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKGYFRKRGE KWSFTIDIGK DPITGKRKQK TASGFKTKKE AERACNELIH QFNTGSLVDD  60
   61 KNFTLSEYLQ EWLENTAKQR VRETTFTNYK RAINSRIIPV LGSHKLKDLK PLHGQRFVKS 120
  121 LIDEGLSPAY IEYIFIVLKG SLEDAVRWEL LFKNPFQHVE IPRPRKVVNS TWSIEETKKF 180
  181 LNRTKFENVI YYHLFLLALN TGMRRGEILG LKWKNFDLNE GKISVTETLI YDENGFRFTE 240
  241 PKTHGSKRLI SIDQNLCKEF KSYKAKQNEF KLLFGQSYED NDLVFAKETG QPILPRTMTT 300
  301 TFNQFIKKAD VPQIRFHDLR HTHATILLKL GINPKIVSER LGHSSIKTTL DTYSHVTIDM 360
  361 QESAVLKLSE ALKS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	48.0
Match:	1a0pA
Description:	SITE-SPECIFIC RECOMBINASE, XERD
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
site-specific recombinase activity	4.99325011803106	bayes_pls_golite062009
integrase activity	3.60695091575172	bayes_pls_golite062009
catalytic activity	2.22520758916604	bayes_pls_golite062009
structure-specific DNA binding	0.11292854906722	bayes_pls_golite062009
DNA binding	0.10970863758177	bayes_pls_golite062009
nucleic acid binding	0.06580979261817	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: