YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|40889993, gi\|...
Organism:	Escherichia coli
Length:	148 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|40889993, gi|....

Description	E-value	Query Range	Subject Range
gi\|75434374, gi\|... - gi\|75434374\|ref\|ZP_00733225.1\| conserved hypothetical protein HI1161 [Actinobacillus succinogenes 13...	127.0	[0..2]	[141..20]
YB61_HAEIN, Y116... - (P45083) Hypothetical UPF0152 protein HI1161, Putative esterase HI_1161 OS=Haemophilus influenzae GN... Y1161_HAEIN - Putative esterase HI_1161 OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=H...	125.0	[0..3]	[138..1]
gi\|229811198, gi... - gi\|229846194\|ref\|ZP_04466306.1\| histidinol-phosphate aminotransferase [Haemophilus influenzae 7P49H1... gi\|42631463 - gi\|42631463\|ref\|ZP_00157001.1\| COG2050: Uncharacterized protein, possibly involved in aromatic compo... gi\|145271620, gi... - gi\|145639317\|ref\|ZP_01794923.1\| hypothetical protein CGSHiII_01164 [Haemophilus influenzae PittII], ...	125.0	[0..3]	[137..1]
gi\|68249710, gi\|... - gi\|68249710\|ref\|YP_248822.1\| hypothetical protein NTHI1330 [Haemophilus influenzae 86-028NP], gi\|680... gi\|148826226, gi... - gi\|148826226\|ref\|YP_001290979.1\| hypothetical protein CGSHiEE_06235 [Haemophilus influenzae PittEE],...	124.0	[0..3]	[138..1]
gi\|168825913, gi... - gi\|32029999\|ref\|ZP_00132927.1\| COG2050: Uncharacterized protein, possibly involved in aromatic compo...	124.0	[0..2]	[138..1]
gi\|112823231, gi... - gi\|23467029\|ref\|ZP_00122614.1\| COG2050: Uncharacterized protein, possibly involved in aromatic compo...	124.0	[0..2]	[138..1]
gi\|41723490, gi\|... - gi\|71908845\|ref\|YP_286432.1\| phenylacetic acid degradation-related protein [Dechloromonas aromatica ...	123.0	[0..2]	[138..1]
gi\|82408016, gi\|... - gi\|82408021\|pdb\|2B6E\|H Chain H, X-Ray Crystal Structure Of Protein Hi1161 From Haemophilus Influenza...	123.0	[0..5]	[138..3]
gi\|238724907, gi... - gi\|77975281\|ref\|ZP_00830817.1\| COG2050: Uncharacterized protein, possibly involved in aromatic compo...	123.0	[0..3]	[138..1]

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Predicted Domain #1

Region A:
Residues: [1-148]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLIWKRKIT LEALNAMGEG NMVGFLDIRF EHIGDDTLEA TMPVDSRTKQ PFGLLHGGAS  60
   61 VVLAESIGSV AGYLCTEGEQ KVVGLEINAN HVRSAREGRV RGVCKPLHLG SRHQVWQIEI 120
  121 FDEKGRLCCS SRLTTAILEG GSHHHHHH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	29.39794
Match:	1vh5A
Description:	Crystal structure of a putative thioesterase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.74605540351792	bayes_pls_golite062009
CoA hydrolase activity	0.319807301869563	bayes_pls_golite062009
thiolester hydrolase activity	0.17111276403715	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: