YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|40889968, gi\|...
Organism:	Escherichia coli
Length:	198 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|40889968, gi|....

Description	E-value	Query Range	Subject Range
gi\|88944793, gi\|... - gi\|88944793\|ref\|ZP_01148017.1\| NTP pyrophosphohydrolases including oxidative damage repair enzymes [...	179.0	[0..5]	[180..1]
gi\|82498927, gi\|... - gi\|82498927\|ref\|ZP_00884381.1\| ADP-ribose pyrophosphatase, putative [Caldicellulosiruptor saccharoly...	177.0	[0..10]	[186..5]
gi\|196251996, gi... - gi\|196251996\|ref\|ZP_03150660.1\| NUDIX hydrolase [Clostridium thermocellum DSM 4150], gi\|196198585\|gb... gi\|48858520, gi\|... - gi\|67916121\|ref\|ZP_00509842.1\| NUDIX hydrolase [Clostridium thermocellum ATCC 27405], gi\|67849923\|gb...	174.0	[0..9]	[185..4]
gi\|20807759, gi\|... - gi\|20807759\|ref\|NP_622930.1\| NTP pyrophosphohydrolase including oxidative damage repair enzyme [Ther... gi\|20807759 - gi\|20807759\|ref\|NP_622930.1\| NTP pyrophosphohydrolase including oxidative damage repair enzyme [Ther...	173.0	[0..8]	[185..3]
gi\|33566206 - gi\|33566206\|emb\|CAE37112.1\| conserved hypothetical protein [Bordetella parapertussis] gi\|33596437 - gi\|33596437\|ref\|NP_884080.1\| hypothetical protein BPP1810 [Bordetella parapertussis 12822] gi\|33576711, gi\|... - gi\|33602272\|ref\|NP_889832.1\| hypothetical protein BB3297 [Bordetella bronchiseptica RB50], gi\|335767...	171.0	[0..3]	[189..16]
gi\|167040190, gi... - gi\|167040190\|ref\|YP_001663175.1\| NUDIX hydrolase [Thermoanaerobacter sp. X514], gi\|166854430\|gb\|ABY9... gi\|241902783, gi... - gi\|241902783\|ref\|ZP_04787514.1\| NUDIX hydrolase [Thermoanaerobacter brockii subsp. finnii Ako-1], gi... gi\|242258345, gi... - gi\|242258345\|ref\|ZP_04803159.1\| NUDIX hydrolase [Thermoanaerobacter sp. X513], gi\|242230130\|gb\|EES32... gi\|76796749, gi\|... - gi\|76796749\|ref\|ZP_00779103.1\| NUDIX hydrolase [Thermoanaerobacter ethanolicus ATCC 33223], gi\|76587...	171.0	[0..8]	[180..3]
gi\|98662389 - gi\|98662389\|dbj\|GAA00716.1\| unnamed protein product [Pelotomaculum thermopropionicum SI]	171.0	[0..9]	[178..8]
gi\|33571969, gi\|... - gi\|33592324\|ref\|NP_879968.1\| hypothetical protein BP1194 [Bordetella pertussis Tohama I], gi\|3357196...	171.0	[0..3]	[189..16]
gi\|15643937, gi\|... - gi\|4981730\|gb\|AAD36256.1\|AE001774_13 conserved hypothetical protein [Thermotoga maritima MSB8], gi\|1... gi\|7445034 - pir\|\|H72286 conserved hypothetical protein - Thermotoga maritima (strain MSB8)	169.0	[0..10]	[175..5]
gi\|251810916, gi... - gi\|251810916\|ref\|ZP_04825389.1\| ADP-ribose diphosphatase [Staphylococcus epidermidis BCM-HMP0060], g... gi\|57866974, gi\|... - gi\|57866974\|ref\|YP_188639.1\| MutT/nudix family protein [Staphylococcus epidermidis RP62A], gi\|576376... gi\|27468101, gi\|... - gi\|27468101\|ref\|NP_764738.1\| ADP-ribose pyrophosphatase [Staphylococcus epidermidis ATCC 12228], gi\|...	169.0	[0..10]	[179..5]

Back

Predicted Domain #1

Region A:
Residues: [1-198]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLSKSLQKP TILNVETVAR SRLFTVESVD LEFSNGVRRV YERMRPTNRE AVMIVPIVDD  60
   61 HLILIREYAV GTESYELGFS KGLIDPGESV YEAANRELKE EVGFGANDLT FLKKLSMAPS 120
  121 YFSSKMNIVV AQDLYPESLE GDEPEPLPQV RWPLAHMMDL LEDPDFNEAR NVSALFLVRE 180
  181 WLKGQGRVEG GSHHHHHH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	42.0
Match:	1vhgA
Description:	Crystal structure of ADP compounds hydrolase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.49075808737475	bayes_pls_golite062009
hydrolase activity	0.914814648797509	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides	0.60834739024706	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	0.608343780811364	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: