YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|209913441, gi...
Organism:	Escherichia coli SE11
Length:	197 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|209913441, gi....

Description	E-value	Query Range	Subject Range
gi\|56129127, gi\|... - gi\|56414870\|ref\|YP_151945.1\| hypothetical protein SPA2778 [Salmonella enterica subsp. enterica serov... gi\|197095275, gi... - gi\|197363798\|ref\|YP_002143435.1\| hypothetical protein SSPA2590 [Salmonella enterica subsp. enterica ...	260.0	[0..1]	[196..1]
gi\|168774728, gi... - gi\|187769605\|gb\|EDU33449.1\| 4-hydroxybenzoate decarboxylase, subunit B [Escherichia coli O157:H7 str... gi\|189362054, gi... - gi\|189362054\|gb\|EDU80473.1\| 4-hydroxybenzoate decarboxylase, subunit B [Escherichia coli O157:H7 str... gi\|189372223, gi... - gi\|189372223\|gb\|EDU90639.1\| 4-hydroxybenzoate decarboxylase, subunit B [Escherichia coli O157:H7 str... gi\|168778722, gi... - gi\|189003454\|gb\|EDU72440.1\| 4-hydroxybenzoate decarboxylase, subunit B [Escherichia coli O157:H7 str... gi\|168749935, gi... - gi\|188015767\|gb\|EDU53889.1\| 4-hydroxybenzoate decarboxylase, subunit B [Escherichia coli O157:H7 str... gi\|168762861, gi... - gi\|189366873\|gb\|EDU85289.1\| 4-hydroxybenzoate decarboxylase, subunit B [Escherichia coli O157:H7 str... gi\|189357352, gi... - gi\|189357352\|gb\|EDU75771.1\| 4-hydroxybenzoate decarboxylase, subunit B [Escherichia coli O157:H7 str... gi\|15832847, gi\|... - gi\|15832847\|ref\|NP_311620.1\| putative phenylacrylic acid decarboxylase [Escherichia coli O157:H7 str... gi\|209159006, gi... - gi\|209397606\|ref\|YP_002272202.1\| 4-hydroxybenzoate decarboxylase, subunit B [Escherichia coli O157:H... gi\|208820709, gi... - gi\|208820709\|ref\|ZP_03261029.1\| 4-hydroxybenzoate decarboxylase, subunit B [Escherichia coli O157:H7... gi\|217327877, gi... - gi\|217327877\|ref\|ZP_03443960.1\| 4-hydroxybenzoate decarboxylase, subunit B [Escherichia coli O157:H7... gi\|25299158, gi\|... - gi\|4887557\|emb\|CAB43500.1\| phenylacrylic acid decarboxylase-like protein [Escherichia coli], pir\|\|A9... gi\|195938490 - gi\|195938490\|ref\|ZP_03083872.1\| putative phenylacrylic acid decarboxylase [Escherichia coli O157:H7 ... PADL_ECO57 - Probable UbiX-like flavin prenyltransferase OS=Escherichia coli O157:H7 GN=ecdB PE=1 SV=1 gi\|168800180, gi... - gi\|189377463\|gb\|EDU95879.1\| 4-hydroxybenzoate decarboxylase, subunit B [Escherichia coli O157:H7 str... gi\|208734592, gi... - gi\|208813315\|ref\|ZP_03254644.1\| 4-hydroxybenzoate decarboxylase, subunit B [Escherichia coli O157:H7... gi\|208728143, gi... - gi\|208808342\|ref\|ZP_03250679.1\| 4-hydroxybenzoate decarboxylase, subunit B [Escherichia coli O157:H7... gi\|254794679, gi... - gi\|254794679\|ref\|YP_003079516.1\| putative decarboxylase [Escherichia coli O157:H7 str. TW14359], gi\|...	256.0	[0..1]	[197..1]
gi\|81242254, gi\|... - gi\|82778106\|ref\|YP_404455.1\| phenylacrylic acid decarboxylase-like protein [Shigella dysenteriae Sd1...	255.0	[0..1]	[197..1]
gi\|194414086, gi... - gi\|75210945\|ref\|ZP_00711069.1\| COG0163: 3-polyprenyl-4-hydroxybenzoate decarboxylase [Escherichia co... gi\|10197690 - gi\|10197690\|gb\|AAG14973.1\|AF242208_6 phenylacrylic acid decarboxylase-like protein [Escherichia coli... PADL_ECO11 - Probable UbiX-like flavin prenyltransferase OS=Escherichia coli O111:H- GN=ecdB PE=3 SV=1	254.0	[0..1]	[197..1]
gi\|25299162 - gi\|25299162\|pir\|\|B85923 probable decarboxylase Z4047 [imported] - Escherichia coli (strain O157:H7,... gi\|15803256, gi\|... - gi\|15803256\|ref\|NP_289288.1\| putative decarboxylase [Escherichia coli O157:H7 EDL933], gi\|12517190\|g...	254.0	[0..1]	[197..1]
gi\|157157116, gi... - gi\|75187467\|ref\|ZP_00700734.1\| COG0163: 3-polyprenyl-4-hydroxybenzoate decarboxylase [Escherichia co...	254.0	[0..1]	[197..1]
gi\|110616178, gi... - gi\|110806630\|ref\|YP_690150.1\| phenylacrylic acid decarboxylase-like protein [Shigella flexneri 5 str...	253.0	[0..1]	[197..1]
gi\|192957043, gi... - gi\|75235662\|ref\|ZP_00719836.1\| COG0163: 3-polyprenyl-4-hydroxybenzoate decarboxylase [Escherichia co...	253.0	[0..1]	[197..1]
gi\|213161739 - gi\|213161739\|ref\|ZP_03347449.1\| decarboxylase [Salmonella enterica subsp. enterica serovar Typhi str... gi\|25299170, gi\|... - gi\|25299170\|pir\|\|AD0855 probable decarboxylase [imported] - Salmonella enterica subsp. enterica sero... gi\|214003230 - gi\|214003230\|ref\|ZP_03413965.1\| decarboxylase [Salmonella enterica subsp. enterica serovar Typhi str... gi\|213857775 - gi\|213857775\|ref\|ZP_03384746.1\| decarboxylase [Salmonella enterica subsp. enterica serovar Typhi str... gi\|29143177, gi\|... - gi\|29143177\|ref\|NP_806519.1\| decarboxylase [Salmonella enterica subsp. enterica serovar Typhi str. T... gi\|213648324 - gi\|213648324\|ref\|ZP_03378377.1\| decarboxylase [Salmonella enterica subsp. enterica serovar Typhi str... gi\|16761693 - gi\|16761693\|ref\|NP_457310.1\| decarboxylase [Salmonella enterica subsp. enterica serovar Typhi str. C... gi\|213425681 - gi\|213425681\|ref\|ZP_03358431.1\| decarboxylase [Salmonella enterica subsp. enterica serovar Typhi str...	253.0	[0..1]	[196..1]
gi\|215488060, gi... - gi\|215488060\|ref\|YP_002330491.1\| predicted phenylacrylic acid decarboxylase [Escherichia coli O127:H... gi\|10197697, gi\|... - gi\|10197710\|gb\|AAG14990.1\|AF242211_2 phenylacrylic acid decarboxylase-like protein [Escherichia coli...	251.0	[0..1]	[197..1]

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Predicted Domain #1

Region A:
Residues: [1-197]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLIVGMTGA TGAPLGVALL QALREMPNVE THLVMSKWAK TTIELETPYS ARDVAALADF  60
   61 SHNPADQAAI ISSGSFRTDG MIVIPCSMKT LAGIRAGYAD GLVGRAADVV LKEGRKLVLV 120
  121 PREMPLSTIH LENMLALSRM GVAMVPPMPA FYNHPETVDD IVHHVVARVL DQFGLEHPHA 180
  181 RRWQGLPQAR NFSQENE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	68.39794
Match:	1sbzA
Description:	Crystal Structure of dodecameric FMN-dependent Ubix-like Decarboxylase from Escherichia coli O157:H7
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
3-octaprenyl-4-hydroxybenzoate carboxy-lyase activity	5.88631349530005	bayes_pls_golite062009
carboxy-lyase activity	2.27469953971238	bayes_pls_golite062009
catalytic activity	1.88716391063227	bayes_pls_golite062009
carbon-carbon lyase activity	1.67751595868044	bayes_pls_golite062009
phosphopantothenoylcysteine decarboxylase activity	1.6488492075417	bayes_pls_golite062009
lyase activity	0.646446561158526	bayes_pls_golite062009
phosphopantothenate--cysteine ligase activity	0.35505046579356	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: