YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|40889657, gi\|...
Organism:	Homo sapiens
Length:	164 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|40889657, gi|....

Description	E-value	Query Range	Subject Range
gi\|60828080 - gi\|60828080\|gb\|AAX36827.1\| tumor necrosis factor [synthetic construct]	179.0	[0..3]	[158..52]
TNF - tumor necrosis factor gi\|123996347, gi... - gi\|61358334\|gb\|AAX41550.1\| tumor necrosis factor [synthetic construct], gi\|208968003\|dbj\|BAG73840.1\|... gi\|114606345, gi... - gi\|90960856\|dbj\|BAE92774.1\| tumor necrosis factor alpha [Pan troglodytes], gi\|90960853\|dbj\|BAE92772....	179.0	[0..3]	[158..52]
gi\|38160 - gi\|38160\|emb\|CAA44068.1\| tumor necrosis factor [Papio hamadryas] TNFA_PAPSP - Tumor necrosis factor OS=Papio sp. GN=TNF PE=3 SV=1	178.0	[0..3]	[158..52]
TNFA_MACMU - Tumor necrosis factor OS=Macaca mulatta GN=TNF PE=2 SV=1	178.0	[0..3]	[158..52]
TNFA_CANLF - Tumor necrosis factor OS=Canis lupus familiaris GN=TNF PE=2 SV=1	177.0	[0..3]	[158..52]
TNFA_PAPHU - Tumor necrosis factor OS=Papio hamadryas ursinus GN=TNF PE=2 SV=1	176.0	[0..3]	[158..52]
gi\|3805811 - gi\|3805811\|emb\|CAA75070.1\| tumor necrosis facor [Homo sapiens] TNFA_PANTR - Tumor necrosis factor OS=Pan troglodytes GN=TNF PE=3 SV=2	176.0	[0..3]	[158..52]
TNFA_MACFA - Tumor necrosis factor OS=Macaca fascicularis GN=TNF PE=2 SV=1	176.0	[0..3]	[158..52]

Back

Predicted Domain #1

Region A:
Residues: [1-164]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GSHMGLQGPS GAADKAGTRE NQPAVVHLQG QGSAIQVKND LSGGVLNDWS RITMNPKVFK  60
   61 LHPRSGELEV LVDGTYFIYS QVYYINFTDF ASYEVVVDEK PFLQCTRSIE TGKTNYNTCY 120
  121 TAGVCLLKAR QKIAVKMVHA DISINMSKHT TFFGAIRLGE APAS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	46.69897
Match:	1rj8A
Description:	The crystal structure of TNF family member EDA-A2
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits