YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|165922629, gi...
Organism:	Yersinia pestis biovar Orientalis str. F1991016
Length:	237 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|165922629, gi....

Description	E-value	Query Range	Subject Range
gi\|238724838, gi... - gi\|77975213\|ref\|ZP_00830749.1\| COG3109: Activator of osmoprotectant transporter ProP [Yersinia frede...	4.0E-75	[1..237]	[1..237]
gi\|238728853, gi... - gi\|77980100\|ref\|ZP_00835515.1\| COG3109: Activator of osmoprotectant transporter ProP [Yersinia inter...	2.0E-73	[1..237]	[1..237]
gi\|77959122, gi\|... - gi\|77959122\|ref\|ZP_00823145.1\| COG3109: Activator of osmoprotectant transporter ProP [Yersinia berco...	3.0E-73	[1..237]	[1..237]
gi\|238798127, gi... - gi\|77961601\|ref\|ZP_00825435.1\| COG3109: Activator of osmoprotectant transporter ProP [Yersinia molla...	2.0E-72	[1..237]	[1..242]
EG12866 - RNA chaperone, putative ProP translation regulator / RNA chaperone, probable regulator of ProP trans... PROQ_ECOLI - ProP effector - Escherichia coli PROQ_ECODH - RNA chaperone ProQ OS=Escherichia coli (strain K12 / DH10B) GN=proQ PE=3 SV=1 EG12866 - RNA chaperone, putative ProP translation regulator / RNA chaperone, probable regulator of ProP trans... PROQ_ECOBW - RNA chaperone ProQ OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=proQ PE=3 SV=1 gi\|85675139, gi\|... - gi\|89108671\|ref\|AP_002451.1\| predicted structural transport element [Escherichia coli str. K-12 subs...	4.0E-72	[1..237]	[1..232]
sp\|B7USK8\|PROQ_ECO27 - ProP effector OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=proQ PE=3 SV=1 PROQ_ECOK1 - RNA chaperone ProQ OS=Escherichia coli O1:K1 / APEC GN=proQ PE=3 SV=1 PROQ_ECOL6 - ProP effector OS=Escherichia coli O6 GN=proQ PE=3 SV=1 gi\|75239748, gi\|... - gi\|75239748\|ref\|ZP_00723711.1\| COG3109: Activator of osmoprotectant transporter ProP [Escherichia co... PROQ_ECOUT - RNA chaperone ProQ OS=Escherichia coli (strain UTI89 / UPEC) GN=proQ PE=3 SV=1 PROQ_ECOL5 - RNA chaperone ProQ OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=proQ PE=3 SV=1 PROQ_ECOL6 - RNA chaperone ProQ OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=proQ PE=3 SV=1 PROQ_ECO27 - RNA chaperone ProQ OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=proQ PE=3 SV=1 PROQ_ECO45 - RNA chaperone ProQ OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=proQ PE=3 SV=1 gi\|227837315, gi... - gi\|227885742\|ref\|ZP_04003547.1\| solute/DNA competence effector [Escherichia coli 83972], gi\|22783731... PROQ_ECO81 - RNA chaperone ProQ OS=Escherichia coli O81 (strain ED1a) GN=proQ PE=3 SV=1	1.0E-70	[1..237]	[1..232]
PROQ_SHISS - RNA chaperone ProQ OS=Shigella sonnei (strain Ss046) GN=proQ PE=3 SV=1 PROQ_SHIBS - RNA chaperone ProQ OS=Shigella boydii serotype 4 (strain Sb227) GN=proQ PE=3 SV=1 gi\|191168514, gi... - gi\|75228315\|ref\|ZP_00714967.1\| COG3109: Activator of osmoprotectant transporter ProP [Escherichia co... gi\|188492341, gi... - gi\|75511136\|ref\|ZP_00733859.1\| COG3109: Activator of osmoprotectant transporter ProP [Escherichia co... gi\|124530975, gi... - gi\|124530975\|ref\|ZP_01701431.1\| ProQ activator of osmoprotectant transporter ProP [Escherichia coli ... PROQ_ECOLC - RNA chaperone ProQ OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=proQ PE=3 SV=1 gi\|24112778, gi\|... - ref\|NP_707288.1\| Activator of ProP osmoprotectant transporter [Shigella flexneri 2a str. 301], gb\|A... PROQ_SHIFL - RNA chaperone ProQ OS=Shigella flexneri GN=proQ PE=3 SV=1 gi\|194434518, gi... - gi\|83569083\|ref\|ZP_00920544.1\| COG3109: Activator of osmoprotectant transporter ProP [Shigella dysen... PROQ_ECOHS - RNA chaperone ProQ OS=Escherichia coli O9:H4 (strain HS) GN=proQ PE=3 SV=1 gi\|242377552, gi... - gi\|251785279\|ref\|YP_002999583.1\| hypothetical protein B21_01790 [Escherichia coli BL21], gi\|24237755... gi\|253773214, gi... - gi\|254288679\|ref\|YP_003054427.1\| putative solute/DNA competence effector [Escherichia coli BL21(DE3)... gi\|253973792, gi... - gi\|254161891\|ref\|YP_003044999.1\| putative solute/DNA competence effector [Escherichia coli B str. RE... PROQ_ECOSE - RNA chaperone ProQ OS=Escherichia coli (strain SE11) GN=proQ PE=3 SV=1 PROQ_ECOSM - RNA chaperone ProQ OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=proQ PE=3 SV=1 PROQ_ECOLU - RNA chaperone ProQ OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=proQ PE=3 SV=1 PROQ_ECO55 - RNA chaperone ProQ OS=Escherichia coli (strain 55989 / EAEC) GN=proQ PE=3 SV=1	2.0E-70	[1..237]	[1..232]
PROQ_SHIB3 - RNA chaperone ProQ OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=proQ PE=3 SV=1	2.0E-70	[1..237]	[1..232]
PROQ_SHIF8 - RNA chaperone ProQ OS=Shigella flexneri serotype 5b (strain 8401) GN=proQ PE=3 SV=1	2.0E-70	[1..237]	[1..232]
PROQ_ECO24 - RNA chaperone ProQ OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=proQ PE=3 SV=1	3.0E-70	[1..237]	[1..232]

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Predicted Domain #1

Region A:
Residues: [1-119]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MENQPKLNSS KEVIAFLAER FPLCFTAEGE ARPLKIGIFQ DLVERVQGEE NLSKTQLRSA  60
   61 LRLYTSSWRY LYGVKVGAER VDLDGNPCGV LEEQHVEHAR KQLEEAKARV QAQRAEQQA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	27.30103
Match:	1dvoA
Description:	Repressor of bacterial conjugation FinO
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [120-237]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KKREAAIAAG ETPEPRRPRP AGKKPAPRRE AGAAPENRKP RQSPRPQQVR PPRPQVEENQ  60
   61 PRPVPVTDIS KLQIGQEIKV RAGKSAMDAT VLEIAKDGVR VQLSSGLAMI VRAEHLQF

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.581	0.002	cytoplasm	g.41.5	Rubredoxin-like
View	Download	0.574	N/A	N/A	g.41.5	Rubredoxin-like
View	Download	0.536	N/A	N/A	g.41.5	Rubredoxin-like
View	Download	0.475	N/A	N/A	b.61.4	Quinohemoprotein amine dehydrogenase A chain, domain 3
View	Download	0.450	N/A	N/A	b.61.4	Quinohemoprotein amine dehydrogenase A chain, domain 3

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits