YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|214001616
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. E98-3139
Length:	181 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|214001616.

Description	E-value	Query Range	Subject Range
gi\|124531368, gi... - gi\|124531368\|ref\|ZP_01701678.1\| NusG antitermination factor [Escherichia coli B], gi\|124498582\|gb\|EA... gi\|218358575, gi... - gi\|218551034\|ref\|YP_002384825.1\| transcription antitermination protein NusG [Escherichia fergusonii ... gi\|218363305, gi... - gi\|218556536\|ref\|YP_002389450.1\| transcription antitermination protein NusG [Escherichia coli IAI1],... gi\|218697689, gi... - gi\|218697689\|ref\|YP_002405356.1\| transcription antitermination protein NusG [Escherichia coli 55989]... gi\|218372598, gi... - gi\|218702612\|ref\|YP_002410241.1\| transcription antitermination protein NusG [Escherichia coli IAI39]... gi\|218707600, gi... - gi\|218707600\|ref\|YP_002415119.1\| transcription antitermination protein NusG [Escherichia coli UMN026... EG10667 - transcription termination factor / Stabilizes phage lambda protein N-NusA-RNAP antitermination compl... gi\|157069130, gi... - gi\|75197846\|ref\|ZP_00707916.1\| COG0250: Transcription antiterminator [Escherichia coli HS], gi\|15716... gi\|73857953, gi\|... - gi\|74314476\|ref\|YP_312895.1\| transcription antitermination protein NusG [Shigella sonnei Ss046], gi\|... gi\|157154871, gi... - gi\|75188712\|ref\|ZP_00701979.1\| COG0250: Transcription antiterminator [Escherichia coli E24377A], gi\|... gi\|89110057, gi\|... - gi\|89110057\|ref\|AP_003837.1\| transcription termination factor [Escherichia coli str. K-12 substr. W3... gi\|81242991, gi\|... - gi\|82778843\|ref\|YP_405192.1\| transcription antitermination protein NusG [Shigella dysenteriae Sd197]... gi\|254795980, gi... - gi\|254795980\|ref\|YP_003080817.1\| transcription termination factor [Escherichia coli O157:H7 str. TW1... gi\|81247735, gi\|... - gi\|82546324\|ref\|YP_410271.1\| transcription antitermination protein NusG [Shigella boydii Sb227], gi\|... gi\|254163923, gi... - gi\|254163923\|ref\|YP_003047031.1\| transcription antitermination protein NusG [Escherichia coli B str.... gi\|226838472, gi... - gi\|254039237\|ref\|ZP_04873286.1\| transcription termination/antitermination factor NusG [Escherichia s... gi\|254290673, gi... - gi\|254290673\|ref\|YP_003056421.1\| transcription antitermination protein NusG [Escherichia coli BL21(D... gi\|242379512, gi... - gi\|251787239\|ref\|YP_003001543.1\| hypothetical protein B21_03811 [Escherichia coli BL21], gi\|24237951... gi\|238903038, gi... - gi\|238903038\|ref\|YP_002928834.1\| transcription termination factor [Escherichia coli BW2952], gi\|2388... NUSG_SHIFL - Transcription termination/antitermination protein NusG OS=Shigella flexneri GN=nusG PE=3 SV=2 gi\|187427213, gi... - gi\|187730221\|ref\|YP_001882667.1\| transcription termination/antitermination factor NusG [Shigella boy... NUSG_ECOLI - Transcription antitermination protein nusG - Escherichia coli gi\|15834159, gi\|... - gi\|15834159\|ref\|NP_312932.1\| transcription antitermination protein NusG [Escherichia coli O157:H7 st... gi\|188487728, gi... - gi\|188492529\|ref\|ZP_02999799.1\| transcription termination/antitermination factor NusG [Escherichia c... gi\|24115267, gi\|... - gi\|24115267\|ref\|NP_709777.1\| transcription antitermination protein NusG [Shigella flexneri 2a str. 3... gi\|110807832, gi... - gi\|110807832\|ref\|YP_691352.1\| transcription antitermination protein NusG [Shigella flexneri 5 str. 8... gi\|195939607 - gi\|195939607\|ref\|ZP_03084989.1\| transcription antitermination protein NusG [Escherichia coli O157:H7... gi\|30042995, gi\|... - gi\|30064735\|ref\|NP_838906.1\| transcription antitermination protein NusG [Shigella flexneri 2a str. 2... gi\|208812131, gi... - gi\|208812131\|ref\|ZP_03253460.1\| transcription termination/antitermination factor NusG [Escherichia c... NUSG_ECO57 - Transcription termination/antitermination protein NusG OS=Escherichia coli O157:H7 GN=nusG PE=3 SV=2 gi\|208739955, gi... - gi\|208819832\|ref\|ZP_03260152.1\| transcription termination/antitermination factor NusG [Escherichia c... EG10667 - transcription termination factor / Stabilizes phage lambda protein N-NusA-RNAP antitermination compl... gi\|209399471, gi... - gi\|209399471\|ref\|YP_002273498.1\| transcription termination/antitermination factor NusG [Escherichia ... gi\|15804572, gi\|... - gi\|15804572\|ref\|NP_290613.1\| transcription antitermination protein NusG [Escherichia coli O157:H7 ED... gi\|209914719, gi... - gi\|209921460\|ref\|YP_002295544.1\| transcription antitermination protein NusG [Escherichia coli SE11],... gi\|217321655, gi... - gi\|217325434\|ref\|ZP_03441518.1\| transcription termination/antitermination factor NusG [Escherichia c... gi\|189354220, gi... - gi\|189354220\|gb\|EDU72639.1\| transcription termination/antitermination factor NusG [Escherichia coli ... gi\|189359775, gi... - gi\|189359775\|gb\|EDU78194.1\| transcription termination/antitermination factor NusG [Escherichia coli ... gi\|189001643, gi... - gi\|189001643\|gb\|EDU70629.1\| transcription termination/antitermination factor NusG [Escherichia coli ... gi\|189370168, gi... - gi\|189370168\|gb\|EDU88584.1\| transcription termination/antitermination factor NusG [Escherichia coli ... gi\|170022015, gi... - gi\|170022015\|ref\|YP_001726969.1\| transcription antitermination protein NusG [Escherichia coli ATCC 8... gi\|170083442, gi... - gi\|170083442\|ref\|YP_001732762.1\| transcription termination factor [Escherichia coli str. K-12 substr... gi\|170682823, gi... - gi\|170682823\|ref\|YP_001746366.1\| transcription termination/antitermination factor NusG [Escherichia ...	7.0E-62	[1..181]	[1..181]
gi\|36783867, gi\|... - gi\|37524443\|ref\|NP_927787.1\| transcription antitermination protein NusG [Photorhabdus luminescens su...	1.0E-61	[1..181]	[1..181]
gi\|238717476, gi... - gi\|77960657\|ref\|ZP_00824519.1\| COG0250: Transcription antiterminator [Yersinia mollaretii ATCC 43969...	2.0E-61	[1..181]	[1..181]
tr\|I0QLY7\|I0QLY7... - Transcription termination/antitermination protein nusG OS=Serratia sp. M24T3 GN=nusG PE=3 SV=1 gi\|84778627, gi\|... - gi\|85058107\|ref\|YP_453809.1\| transcription antitermination protein NusG [Sodalis glossinidius str. '...	3.0E-61	[1..181]	[1..181]
gi\|229686981, gi... - gi\|229899996\|ref\|ZP_04515136.1\| transcription termination factor [Yersinia pestis biovar Orientalis ... gi\|238752784, gi... - gi\|238752784\|ref\|ZP_04614252.1\| Transcription antitermination protein nusG [Yersinia rohdei ATCC 433... gi\|238760251, gi... - gi\|238760251\|ref\|ZP_04621395.1\| Transcription antitermination protein nusG [Yersinia aldovae ATCC 35... gi\|165928331, gi... - gi\|165928331\|ref\|ZP_02224163.1\| transcription termination/antitermination factor NusG [Yersinia pest... gi\|166214413, gi... - gi\|166214413\|ref\|ZP_02240448.1\| transcription termination/antitermination factor NusG [Yersinia pest... gi\|166012043, gi... - gi\|166012043\|ref\|ZP_02232941.1\| transcription termination/antitermination factor NusG [Yersinia pest... gi\|238794964, gi... - gi\|77977799\|ref\|ZP_00833239.1\| COG0250: Transcription antiterminator [Yersinia intermedia ATCC 29909... gi\|238790611, gi... - gi\|77972254\|ref\|ZP_00827826.1\| COG0250: Transcription antiterminator [Yersinia frederiksenii ATCC 33... gi\|77635956, gi\|... - gi\|77635956\|ref\|ZP_00798035.1\| COG0250: Transcription antiterminator [Yersinia pestis Angola], gi\|16... gi\|77631229, gi\|... - gi\|77631229\|ref\|ZP_00793815.1\| COG0250: Transcription antiterminator [Yersinia pseudotuberculosis IP... Q66FQ7\|Q66FQ7_YERPS - Transcription antitermination protein nusG - Yersinia pseudotuberculosis gi\|108781528, gi... - gi\|108809615\|ref\|YP_653531.1\| transcription antitermination protein NusG [Yersinia pestis Antiqua], ... gi\|166957158, gi... - gi\|167422947\|ref\|ZP_02314700.1\| transcription termination/antitermination factor NusG [Yersinia pest... gi\|108810380, gi... - gi\|229900555\|ref\|ZP_04515681.1\| transcription termination factor [Yersinia pestis Nepal516], gi\|2296... gi\|167048191, gi... - gi\|167402411\|ref\|ZP_02307871.1\| transcription termination/antitermination factor NusG [Yersinia pest... gi\|21957175, gi\|... - gi\|22124394\|ref\|NP_667817.1\| transcription antitermination protein NusG [Yersinia pestis KIM], gi\|21... gi\|153997214, gi... - gi\|153997214\|ref\|ZP_02022321.1\| transcription antitermination protein [Yersinia pestis CA88-4125], g... gi\|170022592, gi... - gi\|170022592\|ref\|YP_001719097.1\| transcription antitermination protein NusG [Yersinia pseudotubercul... NUSG_YERPE - Transcription termination/antitermination protein NusG OS=Yersinia pestis GN=nusG PE=3 SV=3 gi\|145212689, gi... - gi\|145600993\|ref\|YP_001165069.1\| transcription antitermination protein NusG [Yersinia pestis Pestoid... gi\|167426816, gi... - gi\|167426816\|ref\|ZP_02318569.1\| transcription termination/antitermination factor NusG [Yersinia pest... gi\|51587915, gi\|... - gi\|51594633\|ref\|YP_068824.1\| transcription antitermination protein NusG [Yersinia pseudotuberculosis... gi\|45442869, gi\|... - gi\|45442869\|ref\|NP_994408.1\| transcription antitermination protein NusG [Yersinia pestis biovar Micr... gi\|186893634, gi... - gi\|186893634\|ref\|YP_001870746.1\| transcription antitermination protein NusG [Yersinia pseudotubercul... gi\|218930757, gi... - gi\|218930757\|ref\|YP_002348632.1\| transcription antitermination protein NusG [Yersinia pestis CO92], ... gi\|165913811, gi... - gi\|89103179\|ref\|ZP_01175768.1\| COG0250: Transcription antiterminator [Yersinia pestis biovar Orienta... gi\|122087631, gi... - gi\|123440670\|ref\|YP_001004663.1\| transcription antitermination protein NusG [Yersinia enterocolitica... gi\|229837498, gi... - gi\|229837498\|ref\|ZP_04457660.1\| transcription termination factor [Yersinia pestis Pestoides A], gi\|2... gi\|229695800, gi... - gi\|229839434\|ref\|ZP_04459593.1\| transcription termination factor [Yersinia pestis biovar Orientalis ...	3.0E-61	[1..181]	[1..181]
gi\|56130232, gi\|... - gi\|56415975\|ref\|YP_153050.1\| transcription antitermination protein NusG [Salmonella enterica subsp. ... gi\|197364902, gi... - gi\|197364902\|ref\|YP_002144539.1\| transcription antitermination protein NusG [Salmonella enterica sub...	4.0E-61	[1..181]	[1..181]
gi\|238713530, gi... - gi\|77957017\|ref\|ZP_00821086.1\| COG0250: Transcription antiterminator [Yersinia bercovieri ATCC 43970...	4.0E-61	[1..181]	[1..181]
gi\|50119178, gi\|... - gi\|50119178\|ref\|YP_048345.1\| transcription antitermination protein NusG [Pectobacterium atrosepticum... gi\|227115002 - gi\|227115002\|ref\|ZP_03828658.1\| transcription antitermination protein NusG [Pectobacterium carotovor... gi\|255056656, gi... - gi\|255056656\|ref\|ZP_05308864.1\| NusG antitermination factor [Pectobacterium wasabiae WPP163], gi\|254... gi\|227328359 - gi\|227328359\|ref\|ZP_03832383.1\| transcription antitermination protein NusG [Pectobacterium carotovor... gi\|251753184, gi... - gi\|253686606\|ref\|YP_003015796.1\| NusG antitermination factor [Pectobacterium carotovorum subsp. caro...	6.0E-61	[1..181]	[1..181]
NUSG_VIBCH - Transcription termination/antitermination protein NusG OS=Vibrio cholerae serotype O1 (strain ATCC 3... gi\|227012179, gi... - gi\|75828308\|ref\|ZP_00757743.1\| COG0250: Transcription antiterminator [Vibrio cholerae O395], gi\|2271... NUSG_VIBCH - Transcription antitermination protein nusG OS=Vibrio cholerae GN=nusG PE=3 SV=3 gi\|153827148, gi... - gi\|153827148\|ref\|ZP_01979815.1\| transcription antitermination protein NusG [Vibrio cholerae MZO-2], ... gi\|254851632, gi... - gi\|254851632\|ref\|ZP_05240982.1\| transcription antitermination protein NusG [Vibrio cholerae MO10], g... gi\|197750379, gi... - gi\|254292282\|ref\|ZP_04963028.1\| transcription antitermination protein NusG [Vibrio cholerae AM-19226... gi\|229369051, gi... - gi\|229606396\|ref\|YP_002877044.1\| transcription antitermination protein NusG [Vibrio cholerae MJ-1236... gi\|229335539, gi... - gi\|229527016\|ref\|ZP_04416412.1\| transcription antitermination protein NusG [Vibrio cholerae 12129(1)... gi\|229343102, gi... - gi\|229519861\|ref\|ZP_04409294.1\| transcription antitermination protein NusG [Vibrio cholerae TM 11079... gi\|229516069, gi... - gi\|229516069\|ref\|ZP_04405520.1\| transcription antitermination protein NusG [Vibrio cholerae RC9], gi... gi\|229508687, gi... - gi\|229508687\|ref\|ZP_04398181.1\| transcription antitermination protein NusG [Vibrio cholerae B33], gi... gi\|229355987, gi... - gi\|229506882\|ref\|ZP_04396390.1\| transcription antitermination protein NusG [Vibrio cholerae BX 33028... gi\|227080535, gi... - gi\|227080535\|ref\|YP_002809086.1\| transcription antitermination protein NusG [Vibrio cholerae M66-2],... gi\|121592079, gi... - gi\|121592079\|ref\|ZP_01679061.1\| transcription antitermination protein NusG [Vibrio cholerae 2740-80]... gi\|124117117, gi... - gi\|153226871\|ref\|ZP_01954953.1\| transcription antitermination protein NusG [Vibrio cholerae MAK 757]...	2.0E-60	[1..180]	[1..180]
gi\|54310503, gi\|... - gi\|54310503\|ref\|YP_131523.1\| transcription antitermination protein NusG [Photobacterium profundum SS...	3.0E-60	[1..180]	[1..180]

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Predicted Domain #1

Region A:
Residues: [1-181]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEAPKKRWY VVQAFSGFEG RVATSLREHI KLHNMEELFG EVMVPTEEVV EIRGGQRRKS  60
   61 ERKFFPGYVL VQMVMNDASW HLVRSVPRVM GFIGGTSDRP APISDKEVDA IMNRLQQVGD 120
  121 KPRPKTLFEP GEMVRVNDGP FADFNGVVEE VDYEKSRLKV SVSIFGRATP VELDFSQVEK 180
  181 A

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	26.30103
Match:	1m1gA
Description:	N-utilization substance G protein NusG, insert domain; N-utilization substance G protein NusG, C-terminal domain; N-utilization substance G protein NusG, N-terminal domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
transcription termination factor activity	7.3828495299519	bayes_pls_golite062009
transcription regulator activity	3.63525538465601	bayes_pls_golite062009
structural constituent of ribosome	2.40236111142017	bayes_pls_golite062009
structural molecule activity	2.11748533169546	bayes_pls_golite062009
nucleic acid binding	0.761013355804059	bayes_pls_golite062009
binding	0.302568764609847	bayes_pls_golite062009
DNA binding	0.302556727687398	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: