YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|170022302, gi...
Organism:	Yersinia pseudotuberculosis YPIII
Length:	224 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|170022302, gi....

Description	E-value	Query Range	Subject Range
Q663U5\|Q663U5_YERPS - Formate dehydrogenase, cytochrome b556 protein precursor - Yersinia pseudotuberculosis gi\|186897443, gi... - gi\|186897443\|ref\|YP_001874555.1\| formate dehydrogenase-O subunit gamma [Yersinia pseudotuberculosis ... gi\|77630993, gi\|... - gi\|77630993\|ref\|ZP_00793579.1\| COG2864: Cytochrome b subunit of formate dehydrogenase [Yersinia pseu... gi\|51598214, gi\|... - gi\|51598214\|ref\|YP_072405.1\| formate dehydrogenase-O subunit gamma [Yersinia pseudotuberculosis IP 3...	2.0E-55	[1..224]	[1..224]
gi\|77973731 - gi\|77973731\|ref\|ZP_00829276.1\| COG2864: Cytochrome b subunit of formate dehydrogenase [Yersinia fred...	5.0E-54	[1..216]	[1..216]
gi\|12720656, gi\|... - gi\|15602271\|ref\|NP_245343.1\| FdxI [Pasteurella multocida subsp. multocida str. Pm70], gi\|12720656\|gb...	6.0E-54	[1..216]	[6..228]
gi\|77960720 - gi\|77960720\|ref\|ZP_00824579.1\| COG2864: Cytochrome b subunit of formate dehydrogenase [Yersinia moll...	7.0E-54	[1..216]	[1..216]
gi\|77978105 - gi\|77978105\|ref\|ZP_00833539.1\| COG2864: Cytochrome b subunit of formate dehydrogenase [Yersinia inte...	8.0E-54	[1..216]	[1..216]
gi\|56127742, gi\|... - gi\|56413485\|ref\|YP_150560.1\| formate dehydrogenase-N subunit gamma [Salmonella enterica subsp. enter...	9.0E-52	[1..214]	[1..216]
gi\|62127772, gi\|... - gi\|62180139\|ref\|YP_216556.1\| formate dehydrogenase-N subunit gamma [Salmonella enterica subsp. enter...	1.0E-51	[1..214]	[1..216]
gi\|194445936, gi... - gi\|194445936\|ref\|YP_002043255.1\| formate dehydrogenase-O, gamma subunit [Salmonella enterica subsp. ... gi\|194448566, gi... - gi\|194448566\|ref\|YP_002048036.1\| formate dehydrogenase-O subunit gamma [Salmonella enterica subsp. e... gi\|194469850, gi... - gi\|194469850\|ref\|ZP_03075834.1\| formate dehydrogenase-O, gamma subunit [Salmonella enterica subsp. e... gi\|194735225, gi... - gi\|194735225\|ref\|YP_002116957.1\| formate dehydrogenase-O, gamma subunit [Salmonella enterica subsp. ... gi\|197289398, gi... - gi\|197289398\|gb\|EDY28763.1\| formate dehydrogenase-O, gamma subunit [Salmonella enterica subsp. enter... gi\|168244220, gi... - gi\|205336945\|gb\|EDZ23709.1\| formate dehydrogenase-O, gamma subunit [Salmonella enterica subsp. enter... gi\|195630172, gi... - gi\|195630172\|gb\|EDX48812.1\| formate dehydrogenase-O, gamma subunit [Salmonella enterica subsp. enter... gi\|205341901, gi... - gi\|205341901\|gb\|EDZ28665.1\| formate dehydrogenase-O, gamma subunit [Salmonella enterica subsp. enter... gi\|205323734, gi... - gi\|205323734\|gb\|EDZ11573.1\| formate dehydrogenase-O, gamma subunit [Salmonella enterica subsp. enter... gi\|167991560, gi... - gi\|205330022\|gb\|EDZ16786.1\| formate dehydrogenase-O, gamma subunit [Salmonella enterica subsp. enter... lcl\|NC_016856.1_... - [gene=fdoI] [protein=formate dehydrogenase-O subunit gamma] [protein_id=YP_005240303.1] [location=co... gi\|205332861, gi... - gi\|205332861\|gb\|EDZ19625.1\| formate dehydrogenase-O, gamma subunit [Salmonella enterica subsp. enter... gi\|213980398 - gi\|213980398\|ref\|ZP_03407657.1\| formate dehydrogenase-O subunit gamma [Salmonella enterica subsp. en... gi\|214002291 - gi\|214002291\|ref\|ZP_03413026.1\| formate dehydrogenase-O subunit gamma [Salmonella enterica subsp. en... gi\|224470373, gi... - gi\|224585845\|ref\|YP_002639644.1\| formate dehydrogenase-O gamma subunit [Salmonella enterica subsp. e... gi\|213052175 - gi\|213052175\|ref\|ZP_03345053.1\| formate dehydrogenase-O subunit gamma [Salmonella enterica subsp. en... gi\|213417589 - gi\|213417589\|ref\|ZP_03350730.1\| formate dehydrogenase-O subunit gamma [Salmonella enterica subsp. en... gi\|213426083 - gi\|213426083\|ref\|ZP_03358833.1\| formate dehydrogenase-O subunit gamma [Salmonella enterica subsp. en... gi\|213586800 - gi\|213586800\|ref\|ZP_03368626.1\| formate dehydrogenase-O subunit gamma [Salmonella enterica subsp. en... gi\|200387297, gi... - gi\|200387297\|ref\|ZP_03213909.1\| formate dehydrogenase-O, gamma subunit [Salmonella enterica subsp. e... gi\|204320767, gi... - gi\|204930363\|ref\|ZP_03221340.1\| formate dehydrogenase-O, gamma subunit [Salmonella enterica subsp. e... gi\|205274165, gi... - gi\|205354384\|ref\|YP_002228185.1\| formate dehydrogenase-O subunit gamma [Salmonella enterica subsp. e... gi\|207859226, gi... - gi\|207859226\|ref\|YP_002245877.1\| formate dehydrogenase-O subunit gamma [Salmonella enterica subsp. e... gi\|197211479, gi... - gi\|197247776\|ref\|YP_002148957.1\| formate dehydrogenase-O, gamma subunit [Salmonella enterica subsp. ... gi\|197263711, gi... - gi\|197263711\|ref\|ZP_03163785.1\| formate dehydrogenase-O, gamma subunit [Salmonella enterica subsp. e... gi\|62182495, gi\|... - gi\|62182495\|ref\|YP_218912.1\| formate dehydrogenase-O subunit gamma [Salmonella enterica subsp. enter... gi\|197096287, gi... - gi\|197364810\|ref\|YP_002144447.1\| formate dehydrogenase-O subunit gamma [Salmonella enterica subsp. e... gi\|56130138, gi\|... - gi\|56415881\|ref\|YP_152956.1\| formate dehydrogenase-O subunit gamma [Salmonella enterica subsp. enter... gi\|197939407, gi... - gi\|198244891\|ref\|YP_002217957.1\| formate dehydrogenase-O, gamma subunit [Salmonella enterica subsp. ... gi\|25284132, gi\|... - gi\|25284132\|pir\|\|AD0946 formate dehydrogenase-O gamma chain [imported] - Salmonella enterica subsp. ... gi\|16422598, gi\|... - gi\|16767300\|ref\|NP_462915.1\| formate dehydrogenase-O subunit gamma [Salmonella typhimurium LT2], gi\|... gi\|238912179 - gi\|238912179\|ref\|ZP_04656016.1\| formate dehydrogenase-O subunit gamma [Salmonella enterica subsp. en... gi\|29139522, gi\|... - gi\|29143886\|ref\|NP_807228.1\| formate dehydrogenase-O subunit gamma [Salmonella enterica subsp. enter... gi\|16762398 - gi\|16762398\|ref\|NP_458015.1\| formate dehydrogenase-O subunit gamma [Salmonella enterica subsp. enter...	1.0E-51	[1..211]	[1..211]
gi\|168235674, gi... - gi\|197290955\|gb\|EDY30308.1\| formate dehydrogenase, gamma subunit [Salmonella enterica subsp. enteric... lcl\|NC_016856.1_... - [gene=fdnI] [protein=formate dehydrogenase-N subunit gamma] [protein_id=YP_005237459.1] [location=co... gi\|194738048, gi... - gi\|194738048\|ref\|YP_002114593.1\| formate dehydrogenase, gamma subunit [Salmonella enterica subsp. en... gi\|167549969, gi... - gi\|205324904\|gb\|EDZ12743.1\| formate dehydrogenase, gamma subunit [Salmonella enterica subsp. enteric... gi\|167992920, gi... - gi\|205328927\|gb\|EDZ15691.1\| formate dehydrogenase, gamma subunit [Salmonella enterica subsp. enteric... gi\|161613991, gi... - gi\|161613991\|ref\|YP_001587956.1\| formate dehydrogenase-N subunit gamma [Salmonella enterica subsp. e... gi\|207856937, gi... - gi\|207856937\|ref\|YP_002243588.1\| formate dehydrogenase-N subunit gamma [Salmonella enterica subsp. e... gi\|16420090, gi\|... - gi\|16764912\|ref\|NP_460527.1\| formate dehydrogenase-N subunit gamma [Salmonella typhimurium LT2], gi\|... gi\|197939983, gi... - gi\|198245467\|ref\|YP_002215578.1\| formate dehydrogenase, gamma subunit [Salmonella enterica subsp. en... gi\|199603443, gi... - gi\|200390998\|ref\|ZP_03217609.1\| formate dehydrogenase, gamma subunit [Salmonella enterica subsp. ent...	1.0E-51	[1..214]	[1..216]
gi\|187430015, gi... - gi\|75176721\|ref\|ZP_00696849.1\| COG2864: Cytochrome b subunit of formate dehydrogenase [Shigella boyd...	6.0E-51	[1..211]	[1..211]

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Predicted Domain #1

Region A:
Residues: [1-224]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKEKPIQRY SAPERINHWI VAFCFILAAI SGLGFFFPSF NWLMNIFGTP QMARILHPFA  60
   61 GVVMFAAFLI MFFRYWKHNL INKDDLEWAK NIHKIAMNEE VGDTGRYNFG QKCVFWAAII 120
  121 SLVLLLVSGV VIWRPYFASS FPIPLIRLAL LVHSLAAVGL IIVIMVHVYA ALWVKGTITA 180
  181 MVEGWVPAAW AKKHHPRWYR EVRSKDDARA NAKGQPQEKQ KEKP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	50.045757
Match:	1kqfC
Description:	Formate dehydrogenase N, cytochrome (gamma) subunit
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
formate dehydrogenase activity	12.0031413212101	bayes_pls_golite062009
oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	6.74953039117709	bayes_pls_golite062009
oxidoreductase activity	6.50321219171766	bayes_pls_golite062009
oxidoreductase activity, acting on the aldehyde or oxo group of donors	6.34988495153085	bayes_pls_golite062009
ubiquinol-cytochrome-c reductase activity	4.50524595323325	bayes_pls_golite062009
oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor	4.50524595323325	bayes_pls_golite062009
hydrogen ion transmembrane transporter activity	4.29455986972274	bayes_pls_golite062009
monovalent inorganic cation transmembrane transporter activity	4.14658254808421	bayes_pls_golite062009
oxidoreductase activity, acting on diphenols and related substances as donors	4.11558350750273	bayes_pls_golite062009
inorganic cation transmembrane transporter activity	3.50341532760587	bayes_pls_golite062009
electron carrier activity	3.28715047874253	bayes_pls_golite062009
cation transmembrane transporter activity	3.24971217721974	bayes_pls_golite062009
ion transmembrane transporter activity	3.0416933490072	bayes_pls_golite062009
catalytic activity	1.19342057724506	bayes_pls_golite062009
binding	1.00930558921984	bayes_pls_golite062009
protein binding	0.588939203772891	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	0.173080554590997	bayes_pls_golite062009
substrate-specific transporter activity	0.0890676728517352	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: