YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|218889667, gi...
Organism:	Pseudomonas aeruginosa LESB58
Length:	159 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|218889667, gi....

Description	E-value	Query Range	Subject Range
gi\|49080752 - gi\|49080752\|gb\|AAT50054.1\| PA4052 [synthetic construct]	1.0E-44	[1..159]	[1..159]
gi\|94417012, gi\|... - gi\|94417012\|ref\|ZP_01296834.1\| hypothetical protein PaerP_01001208 [Pseudomonas aeruginosa PA7], gi\|...	1.0E-44	[1..159]	[1..159]
gi\|126168872, gi... - gi\|84319131\|ref\|ZP_00967534.1\| COG0781: Transcription termination factor [Pseudomonas aeruginosa C37...	4.0E-44	[1..159]	[1..159]
gi\|67085734, gi\|... - gi\|67157057\|ref\|ZP_00418419.1\| Antitermination protein NusB [Azotobacter vinelandii AvOP], gi\|670857... gi\|67157057, gi\|... - gi\|67157057\|ref\|ZP_00418419.1\| Antitermination protein NusB [Azotobacter vinelandii AvOP], ref\|ZP_00...	5.0E-41	[1..159]	[1..159]
NUSB_PSEF5 - N utilization substance protein B homolog OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN...	4.0E-40	[3..159]	[10..166]
NUSB_PSEPF - N utilization substance protein B homolog OS=Pseudomonas fluorescens (strain Pf0-1) GN=nusB PE=3 SV=...	4.0E-40	[3..159]	[10..166]
gi\|95108839 - gi\|95108839\|emb\|CAK13535.1\| transcription termination, L factor (N utilization substance protein B) ... NUSB_PSEE4 - N utilization substance protein B homolog OS=Pseudomonas entomophila (strain L48) GN=nusB PE=3 SV=1	7.0E-40	[3..159]	[10..166]
NUSB_PSEPG - N utilization substance protein B homolog OS=Pseudomonas putida (strain GB-1) GN=nusB PE=3 SV=1 tr\|E4RFS9\|E4RFS9... - N utilization substance protein B homolog OS=Pseudomonas putida (strain BIRD-1) GN=nusB PE=3 SV=1 NUSB_PSEP1 - N utilization substance protein B homolog OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=nusB PE... NUSB_PSEPK - N utilization substance protein B homolog OS=Pseudomonas putida (strain KT2440) GN=nusB PE=3 SV=1 tr\|I7BYV4\|I7BYV4... - N utilization substance protein B homolog OS=Pseudomonas putida (strain DOT-T1E) GN=nusB PE=3 SV=1	2.0E-39	[3..159]	[10..166]
NUSB_PSE14 - N utilization substance protein B homolog OS=Pseudomonas savastanoi pv. phaseolicola (strain 1448A /...	2.0E-39	[7..159]	[13..165]
NUSB_PSEU2 - N utilization substance protein B homolog OS=Pseudomonas syringae pv. syringae (strain B728a) GN=nus...	5.0E-38	[7..159]	[13..165]

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Predicted Domain #1

Region A:
Residues: [1-159]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNQDSGNPA AKPPKGKTAA RRKARSLAVQ ALYSWQIAGQ PLHEIEAQFR TDNDFSEVDG  60
   61 AYFHEILHGV PRQKSELDST FEPCLDRPLA EIDPVELAIL RLSTYELRNR IDVPYKVVIN 120
  121 EGIELAKTFG ATDGHKFVNG VLDKLAPRLR AAELRGGKR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	32.69897
Match:	1ey1A
Description:	Antitermination factor NusB
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
transcription termination factor activity	7.08625510047476	bayes_pls_golite062009
transcription regulator activity	3.63525538465601	bayes_pls_golite062009
binding	1.09289369426124	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: