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View Structure Prediction Details

Protein: gi|170520013, gi...
Organism: Escherichia coli SMS-3-5
Length: 178 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|170520013, gi....

Description E-value Query
Range
Subject
Range
gi|147870 - gi|147870|gb|AAA24649.1| single-strand DNA-binding protein (ssb) [Escherichia coli]
216.0 [0..1] [178..1]
gi|226901544, gi... - gi|237703632|ref|ZP_04534113.1| single strand DNA-binding protein [Escherichia sp. 3_2_53FAA], gi|22...
gi|226840164, gi... - gi|254037058|ref|ZP_04871135.1| single strand DNA-binding protein [Escherichia sp. 1_1_43], gi|22684...
gi|24054654, gi|... - ref|NP_709860.1| ssDNA-binding protein [Shigella flexneri 2a str. 301], gb|AAN45567.1| ssDNA-bindin...
gi|91075172, gi|... - gi|91213598|ref|YP_543584.1| single strand DNA-binding protein [Escherichia coli UTI89], gi|91075172...
212.0 [0..1] [178..22]
gi|81243673, gi|... - gi|82779525|ref|YP_405874.1| single-strand DNA-binding protein [Shigella dysenteriae Sd197], gi|8124...
211.0 [0..1] [178..1]
gi|117626340, gi... - gi|117626340|ref|YP_859663.1| single strand DNA-binding protein [Escherichia coli APEC O1], gi|11551...
211.0 [0..1] [178..20]
gi|12519013, gi|... - gi|15804651|ref|NP_290692.1| single-strand DNA-binding protein [Escherichia coli O157:H7 EDL933], gi...
gi|25294292 - gi|25294292|pir||E86099 ssDNA-binding protein [imported] - Escherichia coli (strain O157:H7, substra...
210.0 [0..1] [178..1]
gi|84780626, gi|... - gi|85060106|ref|YP_455808.1| single-strand DNA-binding protein [Sodalis glossinidius str. 'morsitans...
206.0 [0..1] [178..1]
gi|75179580, gi|... - gi|75179580|ref|ZP_00699584.1| COG0629: Single-stranded DNA-binding protein [Shigella boydii BS512],...
205.0 [0..1] [178..1]
gi|37528177, gi|... - gi|37528177|ref|NP_931522.1| single-strand DNA-binding protein [Photorhabdus luminescens subsp. laum...
204.0 [0..1] [178..1]
SSB_SERMA - Single-stranded DNA-binding protein OS=Serratia marcescens GN=ssb PE=1 SV=2
201.0 [0..1] [178..1]
gi|194684063, gi... - gi|197286576|ref|YP_002152448.1| single-strand binding protein [Proteus mirabilis HI4320], gi|194684...
SSB_PROMI - Single-stranded DNA-binding protein OS=Proteus mirabilis GN=ssb PE=1 SV=2
198.0 [0..1] [178..1]

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Predicted Domain #1
Region A:
Residues: [1-178]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASRGVNKVI LVGNLGQDPE VRYMPNGGAV ANITLATSES WRDKATGEMK EQTEWHRVVL  60
   61 FGKLAEVASE YLRKGSQVYI EGQLRTRKWT DQSGQDRYTT EVVVNVGGTM QMLGGRQGGG 120
  121 APAGGNIGGG QPQGGWGQPQ QPQGGNQFSG GAQSRPQQSA PAAPSNEPPM DFDDDIPF

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 55.154902
Match: 1eqqA
Description: SINGLE STRANDED DNA BINDING PROTEIN AND SSDNA COMPLEX
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
nucleic acid binding 1.65948797337693 bayes_pls_golite062009
single-stranded DNA binding 1.38758756313423 bayes_pls_golite062009
structure-specific DNA binding 1.30327082958682 bayes_pls_golite062009
binding 0.902189695502298 bayes_pls_golite062009
DNA binding 0.9001707539121 bayes_pls_golite062009
structural constituent of ribosome 0.0989196136046104 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle