YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|162317560
Organism:	Escherichia coli APEC O1
Length:	178 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|162317560.

Description	E-value	Query Range	Subject Range
gi\|147870 - gi\|147870\|gb\|AAA24649.1\| single-strand DNA-binding protein (ssb) [Escherichia coli]	216.0	[0..1]	[178..1]
gi\|226901544, gi... - gi\|237703632\|ref\|ZP_04534113.1\| single strand DNA-binding protein [Escherichia sp. 3_2_53FAA], gi\|22... gi\|226840164, gi... - gi\|254037058\|ref\|ZP_04871135.1\| single strand DNA-binding protein [Escherichia sp. 1_1_43], gi\|22684... gi\|24054654, gi\|... - ref\|NP_709860.1\| ssDNA-binding protein [Shigella flexneri 2a str. 301], gb\|AAN45567.1\| ssDNA-bindin... gi\|91075172, gi\|... - gi\|91213598\|ref\|YP_543584.1\| single strand DNA-binding protein [Escherichia coli UTI89], gi\|91075172...	212.0	[0..1]	[178..22]
gi\|81243673, gi\|... - gi\|82779525\|ref\|YP_405874.1\| single-strand DNA-binding protein [Shigella dysenteriae Sd197], gi\|8124...	211.0	[0..1]	[178..1]
gi\|117626340, gi... - gi\|117626340\|ref\|YP_859663.1\| single strand DNA-binding protein [Escherichia coli APEC O1], gi\|11551...	211.0	[0..1]	[178..20]
gi\|12519013, gi\|... - gi\|15804651\|ref\|NP_290692.1\| single-strand DNA-binding protein [Escherichia coli O157:H7 EDL933], gi... gi\|25294292 - gi\|25294292\|pir\|\|E86099 ssDNA-binding protein [imported] - Escherichia coli (strain O157:H7, substra...	210.0	[0..1]	[178..1]
gi\|84780626, gi\|... - gi\|85060106\|ref\|YP_455808.1\| single-strand DNA-binding protein [Sodalis glossinidius str. 'morsitans...	206.0	[0..1]	[178..1]
gi\|75179580, gi\|... - gi\|75179580\|ref\|ZP_00699584.1\| COG0629: Single-stranded DNA-binding protein [Shigella boydii BS512],...	205.0	[0..1]	[178..1]
gi\|37528177, gi\|... - gi\|37528177\|ref\|NP_931522.1\| single-strand DNA-binding protein [Photorhabdus luminescens subsp. laum...	204.0	[0..1]	[178..1]
SSB_SERMA - Single-stranded DNA-binding protein OS=Serratia marcescens GN=ssb PE=1 SV=2	201.0	[0..1]	[178..1]
gi\|194684063, gi... - gi\|197286576\|ref\|YP_002152448.1\| single-strand binding protein [Proteus mirabilis HI4320], gi\|194684... SSB_PROMI - Single-stranded DNA-binding protein OS=Proteus mirabilis GN=ssb PE=1 SV=2	198.0	[0..1]	[178..1]

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Predicted Domain #1

Region A:
Residues: [1-178]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASRGVNKVI LVGNLGQDPE VRYMPNGGAV ANITLATSES WRDKATGEMK EQTEWHRVVL  60
   61 FGKLAEVASE YLRKGSQVYI EGQLRTRKWT DQSGQDRYTT EVVVNVGGTM QMLGGRQGGG 120
  121 APAGGNIGGG QPQGGWGQPQ QPQGGNQFSG GAQSRPQQSA PAAPSNEPPM DFDDDIPF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	55.154902
Match:	1eqqA
Description:	SINGLE STRANDED DNA BINDING PROTEIN AND SSDNA COMPLEX
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
nucleic acid binding	1.65948797337693	bayes_pls_golite062009
single-stranded DNA binding	1.38758756313423	bayes_pls_golite062009
structure-specific DNA binding	1.30327082958682	bayes_pls_golite062009
binding	0.902189695502298	bayes_pls_golite062009
DNA binding	0.9001707539121	bayes_pls_golite062009
structural constituent of ribosome	0.0989196136046104	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: