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View Structure Prediction Details

Protein: gi|218893837, gi...
Organism: Pseudomonas aeruginosa LESB58
Length: 304 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|218893837, gi....

Description E-value Query
Range		 Subject
Range
TRUB_PSEAB - tRNA pseudouridine synthase B OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=truB PE=3 SV=1
 0.0 [1..304] [1..304]
TRUB_PSEA7 - tRNA pseudouridine synthase B OS=Pseudomonas aeruginosa (strain PA7) GN=truB PE=3 SV=1
 0.0 [1..304] [1..304]
TRUB_PSEPF - tRNA pseudouridine synthase B OS=Pseudomonas fluorescens (strain Pf0-1) GN=truB PE=3 SV=1
 0.0 [1..304] [1..304]
TRUB_PSEP1 - tRNA pseudouridine synthase B OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=truB PE=3 SV=1
 0.0 [1..304] [1..304]
TRUB_PSEF5 - tRNA pseudouridine synthase B OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=truB PE=3 S...
 0.0 [1..304] [1..304]
gi|95109017 - gi|95109017|emb|CAK13713.1| tRNA pseudouridine 55 synthase [Pseudomonas entomophila L48]
TRUB_PSEE4 - tRNA pseudouridine synthase B OS=Pseudomonas entomophila (strain L48) GN=truB PE=3 SV=1
 0.0 [1..304] [1..304]
gi|32033694 - gi|32033694|ref|ZP_00133989.1| COG0130: Pseudouridine synthase [Actinobacillus pleuropneumoniae sero...
TRUB_ACTP2 - tRNA pseudouridine synthase B OS=Actinobacillus pleuropneumoniae serotype 5b (strain L20) GN=truB PE...
 0.0 [1..303] [1..304]
TRUB_PSEU2 - tRNA pseudouridine synthase B OS=Pseudomonas syringae pv. syringae (strain B728a) GN=truB PE=3 SV=1
 0.0 [1..304] [1..304]
TRUB_PSE14 - tRNA pseudouridine synthase B OS=Pseudomonas savastanoi pv. phaseolicola (strain 1448A / Race 6) GN=...
 0.0 [1..304] [1..304]
TRUB_MANSM - tRNA pseudouridine synthase B OS=Mannheimia succiniciproducens (strain MBEL55E) GN=truB PE=3 SV=1
 0.0 [1..303] [1..304]

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Predicted Domain #1
Region A:
Residues: [1-304] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQVKRIRRS ISGILVLDKP RGMSSNQALQ KVRWLLNAEK AGHTGSLDPL ATGVLPLCFG  60
   61 EATKFSQYLL DADKGYETVM RMGITTTTGD AEGELLAERD VTVGRDDLEQ ALPRFRGDIE 120
  121 QVPPMYSALK KDGQPLYKLA RAGEVVEREA RSVTITRLDL LSFEPPCATL AVSCSKGTYV 180
  181 RTLVEDLGQV LGCGAHVAAL RRTQAGPFAL AQAITLETLE RVHAEGGPEA LDQFLMPEDS 240
  241 GLLHWPVLQL SEHSAYYWLH GQPVRAPEAP KFGWLRVQDH TGRFIGIGEV TDDGRIAPRR 300
  301 LIRS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 104.0
Match: 1r3fA
Description: Crystal Structure of tRNA Pseudouridine Synthase TruB and Its RNA Complex: RNA-protein Recognition Through a Combination of Rigid Docking and Induced Fit
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
pseudouridine synthase activity 5.60483019625575 bayes_pls_golite062009
intramolecular transferase activity 4.62815459483632 bayes_pls_golite062009
isomerase activity 3.43067391737824 bayes_pls_golite062009
catalytic activity 2.39224964671205 bayes_pls_golite062009
ligase activity 0.636073507077293 bayes_pls_golite062009
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle