YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|208741170, gi...
Organism:	Escherichia coli O157:H7 str. EC4042
Length:	316 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|208741170, gi....

Description	E-value	Query Range	Subject Range
gi\|91211793, gi\|... - gi\|91211793\|ref\|YP_541779.1\| transaldolase A [Escherichia coli UTI89], gi\|91073367\|gb\|ABE08248.1\| tr... gi\|117624660, gi... - gi\|117624660\|ref\|YP_853573.1\| transaldolase A [Escherichia coli APEC O1], gi\|115513784\|gb\|ABJ01859.1... gi\|218366168, gi... - gi\|218559399\|ref\|YP_002392312.1\| transaldolase A [Escherichia coli S88], gi\|218366168\|emb\|CAR03914.1...	425.0	[0..1]	[316..1]
gi\|187733490, gi... - gi\|75178057\|ref\|ZP_00698116.1\| COG0176: Transaldolase [Shigella boydii BS512], gi\|187733490\|ref\|YP_0...	422.0	[0..1]	[316..1]
TAL2_SHISS - Transaldolase 2 OS=Shigella sonnei (strain Ss046) GN=tal2 PE=3 SV=1	421.0	[0..1]	[316..1]
gi\|30042099, gi\|... - gi\|30063844\|ref\|NP_838015.1\| transaldolase A [Shigella flexneri 2a str. 2457T], gi\|30042099\|gb\|AAP17... gi\|110806397, gi... - gi\|110806397\|ref\|YP_689917.1\| transaldolase A [Shigella flexneri 5 str. 8401], gi\|110615945\|gb\|ABF04...	419.0	[0..1]	[316..1]
gi\|24113793, gi\|... - gi\|24113793\|ref\|NP_708303.1\| transaldolase A [Shigella flexneri 2a str. 301], gi\|24052875\|gb\|AAN4401... TALA_SHIFL - Transaldolase A OS=Shigella flexneri GN=talA PE=3 SV=1	417.0	[0..1]	[316..1]
gi\|197261873, gi... - gi\|197261873\|ref\|ZP_03161947.1\| transaldolase [Salmonella enterica subsp. enterica serovar Saintpaul... gi\|205329850, gi... - gi\|205329850\|gb\|EDZ16614.1\| transaldolase [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- ... lcl\|NC_016856.1_... - [gene=talA] [protein=transaldolase A] [protein_id=YP_005238561.1] [location=2634082..2635032] TALA_SALTY - Transaldolase A OS=Salmonella typhimurium GN=talA PE=3 SV=1 gi\|197936736, gi... - gi\|198242220\|ref\|YP_002216540.1\| transaldolase [Salmonella enterica subsp. enterica serovar Dublin s... TALA_SALTY - Transaldolase A OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=talA PE=3 SV=1 TALA_SALTY - Transaldolase A OS=Salmonella typhimurium GN=talA PE=3 SV=1	416.0	[0..1]	[316..1]
TAL2_SALPA - Transaldolase 2 OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=tal2 PE=3 SV=1 gi\|197093055, gi... - gi\|197361579\|ref\|YP_002141215.1\| transaldolase A [Salmonella enterica subsp. enterica serovar Paraty... TAL2_SALPA - Transaldolase 2 OS=Salmonella paratyphi A GN=tal2 PE=3 SV=1	416.0	[0..1]	[316..1]
TALA_SALTI - Transaldolase A OS=Salmonella typhi GN=talA PE=3 SV=1 gi\|213999284 - gi\|213999284\|ref\|ZP_03410019.1\| transaldolase A [Salmonella enterica subsp. enterica serovar Typhi s... gi\|213852705 - gi\|213852705\|ref\|ZP_03382237.1\| transaldolase A [Salmonella enterica subsp. enterica serovar Typhi s... gi\|213646064 - gi\|213646064\|ref\|ZP_03376117.1\| transaldolase A [Salmonella enterica subsp. enterica serovar Typhi s... gi\|213581206 - gi\|213581206\|ref\|ZP_03363032.1\| transaldolase A [Salmonella enterica subsp. enterica serovar Typhi s... gi\|224582995, gi... - gi\|224582995\|ref\|YP_002636793.1\| transaldolase [Salmonella enterica subsp. enterica serovar Paratyph... gi\|16761390 - gi\|16761390\|ref\|NP_457007.1\| transaldolase A [Salmonella enterica subsp. enterica serovar Typhi str.... gi\|205349517, gi... - gi\|205349517\|gb\|EDZ36148.1\| transaldolase [Salmonella enterica subsp. enterica serovar Hadar str. RI... gi\|167549514, gi... - gi\|205325160\|gb\|EDZ12999.1\| transaldolase [Salmonella enterica subsp. enterica serovar Saintpaul str... TALA_SALTI - Transaldolase A OS=Salmonella typhi GN=talA PE=3 SV=1 TAL2_SALCH - Transaldolase 2 OS=Salmonella choleraesuis (strain SC-B67) GN=tal2 PE=3 SV=1 gi\|213428323 - gi\|213428323\|ref\|ZP_03361073.1\| transaldolase A [Salmonella enterica subsp. enterica serovar Typhi s... gi\|213051484 - gi\|213051484\|ref\|ZP_03344362.1\| transaldolase A [Salmonella enterica subsp. enterica serovar Typhi s... TAL2_SALCH - Transaldolase 2 OS=Salmonella choleraesuis GN=tal2 PE=3 SV=1 TAL2_SALCH - Transaldolase 2 OS=Salmonella choleraesuis GN=tal2 PE=3 SV=1 gi\|194404904, gi... - gi\|194446241\|ref\|YP_002041732.1\| transaldolase [Salmonella enterica subsp. enterica serovar Newport ... gi\|205344855, gi... - gi\|205344855\|gb\|EDZ31619.1\| transaldolase [Salmonella enterica subsp. enterica serovar Weltevreden s...	415.0	[0..1]	[316..1]
gi\|213421075 - gi\|213421075\|ref\|ZP_03354141.1\| transaldolase A [Salmonella enterica subsp. enterica serovar Typhi s... gi\|29140913, gi\|... - gi\|29140913\|ref\|NP_804255.1\| transaldolase A [Salmonella enterica subsp. enterica serovar Typhi str....	414.0	[0..1]	[316..1]
TAL_SODGM - Transaldolase OS=Sodalis glossinidius (strain morsitans) GN=tal PE=3 SV=1	413.0	[0..1]	[316..1]

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Predicted Domain #1

Region A:
Residues: [1-316]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNELDGIKQF TTVVADSGDI ESIRHYHPQD ATTNPSLLLK AAGLSQYEHL IDDAIAWGKK  60
   61 NGKTQEQQVV AACDKLAVNF GAEILKIVPG RVSTEVDARL SFDKEKSIEK ARHLVDLYQQ 120
  121 QGVEKSRILI KLASTWEGIR AAEELEKEGI NCNLTLLFSF AQARACAEAG VFLISPFVGR 180
  181 IYDWYQARKP MDPYVVEEDP GVKSVRNIYD YYKQHHYETI VMGASFRRTE QILALTGCDR 240
  241 LTIAPNLLKE LQEKVSPVVR KLIPPSQTFP RPAPMSEAEF RWEHNQDAMA VEKLSEGIRL 300
  301 FAVDQRKLED LLAAKL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	110.0
Match:	1ucwA
Description:	Transaldolase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
transferase activity, transferring aldehyde or ketonic groups	3.28746773527289	bayes_pls_golite062009
transaldolase activity	2.77878684721788	bayes_pls_golite062009
catalytic activity	2.67031204377352	bayes_pls_golite062009
fructose-bisphosphate aldolase activity	2.03916133349076	bayes_pls_golite062009
fructose binding	1.42916270771409	bayes_pls_golite062009
porphobilinogen synthase activity	0.658378297259497	bayes_pls_golite062009
binding	0.467753048702448	bayes_pls_golite062009
transferase activity	0.464721888799972	bayes_pls_golite062009
aldehyde-lyase activity	0.351872954170322	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: