YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|88192000, gi\|...
Organism:	Bacillus sp.
Length:	389 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|88192000, gi|....

Description	E-value	Query Range	Subject Range
gi\|1094067 - gi\|1094067\|prf\|\|2105282A Sar oxidase	268.0	[0..1]	[389..2]
MSOX_BACB0 - Monomeric sarcosine oxidase OS=Bacillus sp. (strain B-0618) GN=soxA PE=1 SV=2 gi\|2126836, gi\|9... - gi\|984788\|dbj\|BAA03967.1\| sarcosine oxidase [Bacillus sp. B-0618], pir\|\|I39975 sarcosine oxidase (EC...	267.0	[0..1]	[389..2]
gi\|84040123 - gi\|84040123\|gb\|AAT44862.2\| monomeric sarcosine oxidase [Bacillus sp. BSD-8]	259.0	[0..1]	[377..2]
MSOX_BACSN - Monomeric sarcosine oxidase OS=Bacillus sp. (strain NS-129) GN=soxA PE=1 SV=1 gi\|80171, gi\|216327 - pir\|\|JU0461 sarcosine oxidase (EC 1.5.3.1) - Bacillus sp, gi\|216327\|dbj\|BAA01410.1\| sarcosine oxida...	256.0	[0..1]	[377..2]
gi\|3116221, gi\|1... - gi\|3116221\|dbj\|BAA25926.1\| sarcosine oxidase [Arthrobacter sp.], gi\|1333650\|dbj\|BAA09716.1\| sarcosin... gi\|1333650\|dbj\|B... - sarcosine oxidase [Arthrobacter sp.]	252.0	[0..2]	[379..5]
MSOX_ARTST - Monomeric sarcosine oxidase OS=Arthrobacter sp. (strain TE1826) GN=soxA PE=1 SV=2	252.0	[0..2]	[379..5]
gi\|88925520, gi\|... - gi\|88944849\|ref\|ZP_01148072.1\| proline dehydrogenase, beta subunit [Desulfotomaculum reducens MI-1],...	245.0	[0..2]	[389..3]

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Predicted Domain #1

Region A:
Residues: [1-389]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 STHFDVIVVG AGSMGMAAGY QLAKQGVKTL LVDAFDPPHT NGSHHGDTRI IRHAYGEGRE  60
   61 YVPLALRSQE LWYELEKETH HKIFTKTGVL VFGPKGESAF VAETMEAAKE HSLTVDLLEG 120
  121 DEINKRWPGI TVPENYNAIF EPNSGVLFSE NCIRAYRELA EARGAKVLTH TRVEDFDISP 180
  181 DSVKIETANG SYTADKLIVS MGAWNSKLLS KLNLDIPLQP YRQVVGFFES DESKYSNDID 240
  241 FPGFMVEVPN GIYYGFPSFG GCGLKLGYHT FGQKIDPDTI NREFGVYPED ESNLRAFLEE 300
  301 YMPGANGELK RGAVCMYTKT LDEHFIIDLH PEHSNVVIAA GFSGHGFKFS SGVGEVLSQL 360
  361 ALTGKTEHDI SIFSINRPAL KESLQKTTI

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Detection Method:	PSI-BLAST
Confidence:	71.69897
Match:	1el5A
Description:	Sarcosine oxidase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
oxidoreductase activity, acting on sulfur group of donors, NAD or NADP as acceptor	1.61125987248836	bayes_pls_golite062009
oxidoreductase activity, acting on sulfur group of donors	1.07245967881566	bayes_pls_golite062009
catalytic activity	1.03127962968326	bayes_pls_golite062009
oxidoreductase activity	0.943208146517927	bayes_pls_golite062009
dihydrolipoyl dehydrogenase activity	0.681230241795345	bayes_pls_golite062009
oxidoreductase activity, acting on the CH-NH2 group of donors	0.397770205910041	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: