YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|34810497
Organism:	Homo sapiens
Length:	195 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|34810497.

Description	E-value	Query Range	Subject Range
gi\|109477625 - gi\|109477625\|ref\|XP_001072623.1\| PREDICTED: similar to Msx2-interacting protein (SPEN homolog) (SMAR...	304.0	[0..1]	[195..3440]
MINT_MOUSE - Msx2-interacting protein OS=Mus musculus GN=Spen PE=1 SV=2	302.0	[0..1]	[195..3450]
SPEN - spen homolog, transcriptional regulator (Drosophila)	300.0	[0..1]	[195..3470]
gi\|76637607 - gi\|76637607\|ref\|XP_591419.2\| PREDICTED: similar to spen homolog, transcriptional regulator, partial ...	293.0	[0..1]	[195..2841]
gi\|68402559 - gi\|68402559\|ref\|XP_697358.1\| PREDICTED: similar to spen homolog, transcriptional regulator [Danio re...	273.0	[0..2]	[195..1998]

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Predicted Domain #1

Region A:
Residues: [1-195]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GLVLPHTEFQ PAPKQDSSPH LTSQRPVDMV QLLKKYPIVW QGLLALKNDT AAVQLHFVSG  60
   61 NNVLAHRSLP LSEGGPPLRI AQRMRLEATQ LEGVARRMTV ETDYCLLLAL PCGRDQEDVV 120
  121 SQTESLKAAF ITYLQAKQAA GIINVPNPGS NQPAYVLQIF PPCEFSESHL SRLAPDLLAS 180
  181 ISNISPHLMI VIASV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	79.69897
Match:	1ow1A
Description:	Crystal structure of the SPOC domain of the human transcriptional corepressor, SHARP.
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits