YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|5853055, gi\|3...
Organism:	Haemophilus influenzae
Length:	270 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|5853055, gi|3....

Description	E-value	Query Range	Subject Range
gi\|42629507 - gi\|42629507\|ref\|ZP_00155053.1\| COG0676: Uncharacterized enzymes related to aldose 1-epimerase [Haemo... gi\|148826026, gi... - gi\|148826026\|ref\|YP_001290779.1\| hypothetical protein CGSHiEE_05025 [Haemophilus influenzae PittEE],... gi\|229809617, gi... - gi\|229847476\|ref\|ZP_04467573.1\| predicted enzyme [Haemophilus influenzae 7P49H1], gi\|229809617\|gb\|EE...	263.0	[0..1]	[270..1]
gi\|145638896, gi... - gi\|145638896\|ref\|ZP_01794504.1\| predicted enzyme [Haemophilus influenzae PittII], gi\|145271868\|gb\|ED... gi\|145629396, gi... - gi\|145629396\|ref\|ZP_01785194.1\| predicted enzyme [Haemophilus influenzae 22.1-21], gi\|144978239\|gb\|E... gi\|46133514 - gi\|46133514\|ref\|ZP_00157319.2\| COG0676: Uncharacterized enzymes related to aldose 1-epimerase [Haemo...	263.0	[0..1]	[270..1]
gi\|68249986, gi\|... - gi\|68249986\|ref\|YP_249098.1\| enzyme related to aldose 1-epimerase [Haemophilus influenzae 86-028NP],...	261.0	[0..1]	[270..1]
gi\|52307469, gi\|... - gi\|52425417\|ref\|YP_088554.1\| hypothetical protein MS1362 [Mannheimia succiniciproducens MBEL55E], gi...	248.0	[0..1]	[269..56]
gi\|40253263, gi\|... - gi\|50942779\|ref\|XP_480917.1\| putative Aldose 1-epimerase [Oryza sativa (japonica cultivar-group)], g... gi\|218200730 - gi\|218200730\|gb\|EEC83157.1\| hypothetical protein OsI_28370 [Oryza sativa Indica Group]	248.0	[0..7]	[268..26]
gi\|116185192, gi... - gi\|75855837\|ref\|ZP_00763477.1\| COG0676: Uncharacterized enzymes related to aldose 1-epimerase [Vibri...	248.0	[0..2]	[268..5]
gi\|59479620, gi\|... - gi\|59711519\|ref\|YP_204295.1\| hypothetical protein VF_0912 [Vibrio fischeri ES114], gi\|59479620\|gb\|AA...	247.0	[0..2]	[269..5]
gi\|91191747, gi\|... - gi\|91223661\|ref\|ZP_01258926.1\| hypothetical protein V12G01_23383 [Vibrio alginolyticus 12G01], gi\|91...	247.0	[0..2]	[268..5]
gi\|28807151 - gi\|28807151\|dbj\|BAC60421.1\| conserved hypothetical protein [Vibrio parahaemolyticus RIMD 2210633] gi\|28807151, gi\|... - gi\|28898932\|ref\|NP_798537.1\| hypothetical protein VP2158 [Vibrio parahaemolyticus RIMD 2210633], gi\|... gi\|149747895, gi... - gi\|153838675\|ref\|ZP_01991342.1\| aldose 1-epimerase subfamily [Vibrio parahaemolyticus AQ3810], gi\|14...	247.0	[0..2]	[269..5]
gi\|77634449, gi\|... - gi\|77634449\|ref\|ZP_00796549.1\| COG0676: Uncharacterized enzymes related to aldose 1-epimerase [Yersi... gi\|165939389, gi... - gi\|89101822\|ref\|ZP_01174514.1\| COG0676: Uncharacterized enzymes related to aldose 1-epimerase [Yersi... gi\|108807509, gi... - gi\|108807509\|ref\|YP_651425.1\| hypothetical protein YPA_1513 [Yersinia pestis Antiqua], gi\|108779422\|... gi\|229902080, gi... - gi\|229902080\|ref\|ZP_04517201.1\| conserved protein [Yersinia pestis Nepal516], gi\|229680976\|gb\|EEO770... gi\|22126054, gi\|... - gi\|22126054\|ref\|NP_669477.1\| hypothetical protein y2166 [Yersinia pestis KIM], gi\|21959007\|gb\|AAM857... gi\|25348240 - pir\|\|AH0262 conserved hypothetical protein YPO2156 [imported] - Yersinia pestis (strain CO92) gi\|51589690, gi\|... - gi\|51596408\|ref\|YP_070599.1\| hypothetical protein YPTB2082 [Yersinia pseudotuberculosis IP 32953], g... gi\|45441757, gi\|... - gi\|45441757\|ref\|NP_993296.1\| hypothetical protein YP_1956 [Yersinia pestis biovar Microtus str. 9100... Q66AP8\|Q66AP8_YERPS - Putative uncharacterized protein - Yersinia pseudotuberculosis gi\|15980160, gi\|... - gi\|218929256\|ref\|YP_002347131.1\| hypothetical protein YPO2156 [Yersinia pestis CO92], gi\|16122388\|re... gi\|186895453, gi... - gi\|186895453\|ref\|YP_001872565.1\| aldose 1-epimerase [Yersinia pseudotuberculosis PB1/+], gi\|18669847... gi\|169750865, gi... - gi\|170024331\|ref\|YP_001720836.1\| aldose 1-epimerase [Yersinia pseudotuberculosis YPIII], gi\|16975086... gi\|149292334, gi... - gi\|149365921\|ref\|ZP_01887956.1\| hypothetical protein YPE_1103 [Yersinia pestis CA88-4125], gi\|149292... gi\|145209971, gi... - gi\|145598275\|ref\|YP_001162351.1\| hypothetical protein YPDSF_0978 [Yersinia pestis Pestoides F], gi\|1... gi\|229894830, gi... - gi\|229894830\|ref\|ZP_04510010.1\| conserved protein [Yersinia pestis Pestoides A], gi\|229702303\|gb\|EEO... gi\|229897574, gi... - gi\|229897574\|ref\|ZP_04512730.1\| conserved protein [Yersinia pestis biovar Orientalis str. PEXU2], gi... gi\|229898219, gi... - gi\|229898219\|ref\|ZP_04513367.1\| conserved protein [Yersinia pestis biovar Orientalis str. India 195]... gi\|165991778, gi... - gi\|166009223\|ref\|ZP_02230121.1\| aldose 1-epimerase [Yersinia pestis biovar Antiqua str. E1979001], g... gi\|165927750, gi... - gi\|165927750\|ref\|ZP_02223582.1\| aldose 1-epimerase [Yersinia pestis biovar Orientalis str. F1991016]... gi\|167049116, gi... - gi\|167401420\|ref\|ZP_02306917.1\| aldose 1-epimerase [Yersinia pestis biovar Antiqua str. UG05-0454], ... gi\|166210576, gi... - gi\|166210576\|ref\|ZP_02236611.1\| aldose 1-epimerase [Yersinia pestis biovar Antiqua str. B42003004], ... gi\|167426586, gi... - gi\|167426586\|ref\|ZP_02318339.1\| aldose 1-epimerase [Yersinia pestis biovar Mediaevalis str. K1973002... gi\|166961747, gi... - gi\|167420052\|ref\|ZP_02311805.1\| aldose 1-epimerase [Yersinia pestis biovar Orientalis str. MG05-1020...	247.0	[0..2]	[269..7]

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Predicted Domain #1

Region A:
Residues: [1-270]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKTTLLKTLT PELHLVQHND IPVLHLKHAV GTAKISLQGA QLISWKPQNA KQDVLWLSEV  60
   61 EPFKNGNAIR GGVPICYPWF GGVKQPAHGT ARIRLWQLSH YYISVHKVRL EFELFSDLNI 120
  121 IEAKVSMVFT DKCHLTFTHY GEESAQAALH TYFNIGDINQ VEVQGLPETC FNSLNQQQEN 180
  181 VPSPRHISEN VDCIYSAENM QNQILDKSFN RTIALHHHNA SQFVLWNPWH KKTSGMSETG 240
  241 YQKMLCLETA RIHHLLEFGE SLSVEISLKG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	70.39794
Match:	1jovA
Description:	Hypothetical protein HI1317
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.770933849734279	bayes_pls_golite062009
racemase and epimerase activity, acting on carbohydrates and derivatives	0.68102716507433	bayes_pls_golite062009
aldose 1-epimerase activity	0.521235680233587	bayes_pls_golite062009
racemase and epimerase activity	0.473636146090495	bayes_pls_golite062009
isomerase activity	0.106573908779409	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: