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View Structure Prediction Details

Protein: PUP2_ARATH
Organism: Arabidopsis thaliana
Length: 358 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PUP2_ARATH.

Description E-value Query
Range
Subject
Range
gi|85110407 - gi|85110407|ref|XP_963444.1| hypothetical protein NCU05453 [Neurospora crassa OR74A]
gi|32409655, gi|... - gi|32409655|ref|XP_325308.1| related to SLY41 protein [MIPS] [Neurospora crassa], gi|28925125|gb|EAA...
156.0 [0..9] [357..131]

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Predicted Domain #1
Region A:
Residues: [1-66]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKMKTVLVII NCIFLAIGNC GGPLMMRLYF QNGGERIWFP SFLQTVGCPL IFFPLLLSFL  60
   61 RRRRCL

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [67-228]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EEQETTPFFL MKPPLFIAAI VVGLLVGFDN YLYSYGLAYI PVSTASLIIS AQLGFTALFA  60
   61 FFMVKQKFTP FTINAIVLLT GGAVVLALNS DSDKLANETH KEYVVGFIMT LGAALLYGFI 120
  121 LPLVELSYKK SGQRITYTLA LEFQMVLCFA ATCVCLVGML AA

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 2.19
Match: 2i68A
Description: No description for 2i68A was found.

Predicted Domain #3
Region A:
Residues: [229-358]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GDFKVKHALF IFKNRVIAGE ARDFKLGESL YYVVIVFTAI IWQAFFVGAI GLIFCASSLV  60
   61 SGIMVSALLP VTVILAVICF QEKFQAGKGV ALALSLWGSV SYFYGQVKSE EKTKAQDTQL 120
  121 SQLPVTDYVA 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle