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View Structure Prediction Details

Protein: PUP2_ARATH
Organism: Arabidopsis thaliana
Length: 358 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PUP2_ARATH.

Description E-value Query
Range
Subject
Range
gi|85110407 - gi|85110407|ref|XP_963444.1| hypothetical protein NCU05453 [Neurospora crassa OR74A]
gi|32409655, gi|... - gi|32409655|ref|XP_325308.1| related to SLY41 protein [MIPS] [Neurospora crassa], gi|28925125|gb|EAA...
156.0 [0..9] [357..131]

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Predicted Domain #1
Region A:
Residues: [1-66]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKMKTVLVII NCIFLAIGNC GGPLMMRLYF QNGGERIWFP SFLQTVGCPL IFFPLLLSFL  60
   61 RRRRCL

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [67-228]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EEQETTPFFL MKPPLFIAAI VVGLLVGFDN YLYSYGLAYI PVSTASLIIS AQLGFTALFA  60
   61 FFMVKQKFTP FTINAIVLLT GGAVVLALNS DSDKLANETH KEYVVGFIMT LGAALLYGFI 120
  121 LPLVELSYKK SGQRITYTLA LEFQMVLCFA ATCVCLVGML AA

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 2.19
Match: 2i68A
Description: No description for 2i68A was found.

Predicted Domain #3
Region A:
Residues: [229-358]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GDFKVKHALF IFKNRVIAGE ARDFKLGESL YYVVIVFTAI IWQAFFVGAI GLIFCASSLV  60
   61 SGIMVSALLP VTVILAVICF QEKFQAGKGV ALALSLWGSV SYFYGQVKSE EKTKAQDTQL 120
  121 SQLPVTDYVA 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle