YRC Public Data Repository - Protein Structure Prediction

Protein:	IF1A_ONOVI
Organism:	Onobrychis viciifolia
Length:	145 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for IF1A_ONOVI.

Description	E-value	Query Range	Subject Range
gi\|68359915, gi\|... - gi\|68359915\|ref\|XP_694296.1\| PREDICTED: similar to eukaryotic translation initiation factor 1A, Y-li...	169.0	[0..1]	[145..1]
gi\|111063791 - gi\|111063791\|gb\|EAT84911.1\| hypothetical protein SNOG_07445 [Phaeosphaeria nodorum SN15]	168.0	[0..1]	[135..1]
gi\|151301107, gi... - gi\|87248491\|gb\|ABD36298.1\| eukaryotic translation initiation factor 1A [Bombyx mori], gi\|151301107\|r...	167.0	[0..1]	[145..1]
gi\|91079674 - gi\|91079674\|ref\|XP_967161.1\| PREDICTED: similar to Eukaryotic initiation factor 1A CG8053-PA [Tribol...	167.0	[0..1]	[145..1]
gi\|55241489, gi\|... - gi\|58383799\|ref\|XP_312806.2\| AGAP003119-PA [Anopheles gambiae str. PEST], gi\|55241489\|gb\|EAA08471.2\|... gi\|5690414 - gi\|5690414\|gb\|AAD47075.1\|AF164151_1 translation initiation factor 4C (1A) [Anopheles gambiae]	166.0	[0..1]	[145..1]
gi\|94393463 - gi\|94393463\|ref\|XP_983504.1\| PREDICTED: similar to X-linked eukaryotic translation initiation factor...	166.0	[0..1]	[130..1]
gi\|83320111, gi\|... - gi\|83320111\|ref\|NP_001020500.1\| eukaryotic translation initiation factor 1A, X-linked [Bos taurus], ...	165.0	[0..1]	[128..1]
eIF-1A-PA, eIF-1... - The gene Eukaryotic initiation factor 1A is referred to in FlyBase by the symbol Dmel\eIF-1A (CG8053... gi\|195449988, gi... - gi\|195449988\|ref\|XP_002072314.1\| GK22392 [Drosophila willistoni], gi\|194168399\|gb\|EDW83300.1\| GK2239... gi\|195569935, gi... - gi\|195569935\|ref\|XP_002102964.1\| GD19223 [Drosophila simulans], gi\|194198891\|gb\|EDX12467.1\| GD19223 ... gi\|220948970, gi... - gi\|220957690\|gb\|ACL91388.1\| eIF-1A-PA [synthetic construct], gi\|220948970\|gb\|ACL87028.1\| eIF-1A-PA [... gi\|194764537, gi... - gi\|194764537\|ref\|XP_001964385.1\| GF23078 [Drosophila ananassae], gi\|190614657\|gb\|EDV30181.1\| GF23078... gi\|190651367, gi... - gi\|194900238\|ref\|XP_001979664.1\| GG22826 [Drosophila erecta], gi\|190651367\|gb\|EDV48622.1\| GG22826 [D... gi\|38047995, gi\|... - gi\|38047995\|gb\|AAR09900.1\| similar to Drosophila melanogaster eIF-1A [Drosophila yakuba], gi\|1954975... gi\|193899766, gi... - gi\|195062888\|ref\|XP_001996271.1\| GH22399 [Drosophila grimshawi], gi\|193899766\|gb\|EDV98632.1\| GH22399... gi\|54639054, gi\|... - gi\|54639054\|gb\|EAL28456.1\| GA20792 [Drosophila pseudoobscura pseudoobscura], gi\|125776545\|ref\|XP_001... gi\|195109642, gi... - gi\|195109642\|ref\|XP_001999392.1\| GI24484 [Drosophila mojavensis], gi\|193915986\|gb\|EDW14853.1\| GI2448... gi\|125776545\|ref... - GA20792-PA [Drosophila pseudoobscura], GA20792 [Drosophila pseudoobscura pseudoobscura] gi\|194112158, gi... - gi\|195152353\|ref\|XP_002017101.1\| GL21704 [Drosophila persimilis], gi\|194112158\|gb\|EDW34201.1\| GL2170... gi\|194122588, gi... - gi\|195348897\|ref\|XP_002040983.1\| GM15296 [Drosophila sechellia], gi\|194122588\|gb\|EDW44631.1\| GM15296... gi\|194152697, gi... - gi\|195391928\|ref\|XP_002054611.1\| GJ24550 [Drosophila virilis], gi\|194152697\|gb\|EDW68131.1\| GJ24550 [...	165.0	[0..1]	[145..1]

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Predicted Domain #1

Region A:
Residues: [1-145]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPKNKGKGGK NRKRGKNEAD DDKRELVFKE DGQEYAQVLR MLGNGRCEAM CIDGTKRLCH  60
   61 IRGKMHKKVW IAAGDIILVG LRDYQDDKAD VILKLMPDEA RLLKAYGELP DNTRLNEGIG 120
  121 AGGLDEEMDT ANDYIEFEDE DIDKI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	40.0
Match:	1d7qA
Description:	Translation initiation factor-1a, eIF1a
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits