YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|28948834, gi\|...
Organism:	Homo sapiens
Length:	128 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|28948834, gi|....

Description	E-value	Query Range	Subject Range
gi\|50736341 - gi\|50736341\|ref\|XP_426065.1\| PREDICTED: similar to Par-6 partitioning defective 6 homolog gamma [Gal...	138.0	[0..1]	[128..671]
gi\|31543460, gi\|... - gi\|31543460\|ref\|NP_444347.2\| par-6 partitioning defective 6 homolog gamma [Mus musculus], gi\|2290235...	129.0	[0..1]	[128..127]
gi\|89273415, gi\|... - gi\|89273415\|emb\|CAJ83079.1\| par-6 partitioning defective 6 homolog gamma (C. elegans) [Xenopus tropi...	128.0	[0..2]	[128..130]
gi\|47086899, gi\|... - gi\|94734504\|emb\|CAK10942.1\| novel protein (id:ibd2873) [Danio rerio], gi\|47086899\|ref\|NP_997728.1\| p...	128.0	[0..1]	[128..127]
PARD6B - par-6 partitioning defective 6 homolog beta (C. elegans)	126.0	[0..1]	[128..126]
gi\|147903992, gi... - gi\|49115222\|gb\|AAH73237.1\| MGC80569 protein [Xenopus laevis], gi\|147903992\|ref\|NP_001085714.1\| MGC80...	126.0	[0..2]	[128..130]

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Predicted Domain #1

Region A:
Residues: [1-128]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RKKPHIVISM PQDFRPVSSI IDVDILPETH RRVRLCKYGT EKPLGFYIRD GSSVRVTPHG  60
   61 LEKVPGIFIS RLVPGGLAQS TGLLAVNDEV LEVNGIEVSG KSLDQVTDMM IANSRNLIIT 120
  121 VRPANQRN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	28.221849
Match:	1nf3C
Description:	GTPase-binding domain of the cell polarity protein par6 (Par-6B)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.566291652083235	bayes_pls_golite062009
protein binding	0.52823753548825	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: