YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|28948673, gi\|...
Organism:	Arabidopsis thaliana
Length:	209 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|28948673, gi|....

Description	E-value	Query Range	Subject Range
gi\|82500508, gi\|... - gi\|82500508\|ref\|ZP_00885919.1\| DNA/pantothenate metabolism flavoprotein [Caldicellulosiruptor saccha...	240.0	[0..15]	[209..1]
gi\|52842696, gi\|... - gi\|52842696\|ref\|YP_096495.1\| phosphopantothenoylcysteine decarboxylase/phosphopantothenate-cysteine ...	239.0	[0..3]	[209..55]
HAL3A_ARATH - Phosphopantothenoylcysteine decarboxylase OS=Arabidopsis thaliana GN=HAL3A PE=1 SV=1	239.0	[0..1]	[207..1]
gi\|30138797, gi\|... - gi\|30249434\|ref\|NP_841504.1\| bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothen...	238.0	[0..17]	[209..7]
gi\|114307810, gi... - gi\|71550056\|ref\|ZP_00670204.1\| DNA/pantothenate metabolism flavoprotein [Nitrosomonas eutropha C71],...	238.0	[0..16]	[209..6]
gi\|56178360, gi\|... - gi\|56459350\|ref\|YP_154631.1\| phosphopantothenoylcysteine synthetase/decarboxylase [Idiomarina loihie...	237.0	[0..17]	[209..4]
gi\|113527778, gi... - gi\|113869002\|ref\|YP_727491.1\| bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothe...	236.0	[0..15]	[209..1]
gi\|56419704, gi\|... - gi\|56419704\|ref\|YP_147022.1\| pantothenate metabolism flavoprotein [Geobacillus kaustophilus HTA426],...	236.0	[0..18]	[209..3]
gi\|115251643, gi... - gi\|126700206\|ref\|YP_001089103.1\| coenzyme A biosynthesis bifunctional protein [Clostridium difficile...	236.0	[0..17]	[209..2]
gi\|22124013, gi\|... - gi\|22124013\|ref\|NP_667436.1\| phosphopantothenoylcysteine synthase/decarboxylase [Yersinia pestis KIM... gi\|145212793, gi... - gi\|145601097\|ref\|YP_001165173.1\| bifunctional phosphopantothenoylcysteine decarboxylase/phosphopanto... gi\|165926067, gi... - gi\|165926067\|ref\|ZP_02221899.1\| phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cyste... gi\|166213762, gi... - gi\|166213762\|ref\|ZP_02239797.1\| phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cyste... gi\|166011425, gi... - gi\|166011425\|ref\|ZP_02232323.1\| phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cyste... gi\|167418905, gi... - gi\|167418905\|ref\|ZP_02310658.1\| phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cyste... gi\|167402115, gi... - gi\|167402115\|ref\|ZP_02307592.1\| phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cyste... gi\|186893391, gi... - gi\|186893391\|ref\|YP_001870503.1\| phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cyst... gi\|89103898 - gi\|89103898\|ref\|ZP_01176458.1\| COG0452: Phosphopantothenoylcysteine synthetase/decarboxylase [Yersin... gi\|167426675, gi... - gi\|167426675\|ref\|ZP_02318428.1\| phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cyste... gi\|108809485, gi... - gi\|108809485\|ref\|YP_653401.1\| bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothe... gi\|77634073, gi\|... - gi\|77634073\|ref\|ZP_00796182.1\| COG0452: Phosphopantothenoylcysteine synthetase/decarboxylase [Yersin... gi\|108813962, gi... - gi\|108813962\|ref\|YP_649729.1\| bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothe...	236.0	[0..9]	[209..35]

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Predicted Domain #1

Region A:
Residues: [1-209]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MENGKRDRQD MEVNTTPRKP RVLLAASGSV AAIKFGNLCH CFTEWAEVRA VVTKSSLHFL  60
   61 DKLSLPQEVT LYTDEDEWSS WNKIGDPVLH IELRRWADVL VIAPLSANTL GKIAGGLCDN 120
  121 LLTCIIRAWD YTKPLFVAPA MNTLMWNNPF TERHLLSLDE LGITLIPPIK KRLASGDYGN 180
  181 GAMAEPSLIY STVRLFWESQ AHQQTGGTS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	63.30103
Match:	1e20A
Description:	4'-phosphopantothenoylcysteine decarboxylase (PPC decarboxylase, halotolerance protein Hal3a)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
phosphopantothenoylcysteine decarboxylase activity	3.86093811191169	bayes_pls_golite062009
phosphopantothenate--cysteine ligase activity	2.64345867885176	bayes_pls_golite062009
carboxy-lyase activity	1.79168084682693	bayes_pls_golite062009
catalytic activity	1.51672397362026	bayes_pls_golite062009
carbon-carbon lyase activity	1.03827559540394	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: