YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|28374057, gi\|...
Organism:	Homo sapiens
Length:	80 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|28374057, gi|....

Description	E-value	Query Range	Subject Range
gi\|2801465, gi\|9... - gi\|9629901\|ref\|NP_045935.1\| p110 [Avian myelocytomatosis virus], gi\|61609\|emb\|CAA24499.1\| p96 polypr... gi\|625263 - gi\|625263\|pir\|\|FOFV29 gag-myc polyprotein - avian myelocytomatosis virus MC29 (provirus)	104.0	[0..2]	[80..792]
gi\|109124486 - gi\|109124486\|ref\|XP_001111345.1\| PREDICTED: similar to LISCH protein isoform 1 [Macaca mulatta]	102.0	[0..2]	[80..613]
gi\|1584232 - gi\|1584232\|prf\|\|2122337B myc protein	99.0	[0..2]	[80..356]
MYC_CYNVA - Myc proto-oncogene protein - Cynocephalus variegatus (Flying lemur) (Malayan colugo) MYC_GALVR - Myc proto-oncogene protein OS=Galeopterus variegatus GN=MYC PE=3 SV=1	99.0	[0..2]	[80..356]
MYC_TUPGL - Myc proto-oncogene protein OS=Tupaia glis GN=MYC PE=3 SV=1	99.0	[0..2]	[80..356]
gi\|49168494 - gi\|49168494\|emb\|CAG38742.1\| USF2 [Homo sapiens]	99.0	[0..2]	[80..237]
gi\|94379911, gi\|... - gi\|94379911\|ref\|XP_001001413.1\| PREDICTED: similar to upstream transcription factor 2 [Mus musculus]...	99.0	[0..2]	[80..264]

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Predicted Domain #1

Region A:
Residues: [1-80]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SRSTHNEMEK NRRAHLRLSL EKLKGLVPLG PDSSRHTTLS LLTKAKLHIK KLEDSDRKAV  60
   61 HQIDQLQREQ RHLKRQLEKL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	8.154902
Match:	1nlwA
Description:	Mad protein
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	1.12507195426228	bayes_pls_golite062009
nucleic acid binding	0.43204604575196	bayes_pls_golite062009
DNA binding	0.40884226851256	bayes_pls_golite062009
transcription regulator activity	0.31759335140578	bayes_pls_golite062009
transcription factor activity	0.09721565916723	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: