YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|28373373, gi\|...
Organism:	Homo sapiens
Length:	90 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|28373373, gi|....

Description	E-value	Query Range	Subject Range
gi\|73983533 - gi\|73983533\|ref\|XP_854381.1\| PREDICTED: similar to CD81 antigen (26 kDa cell surface protein TAPA-1)...	131.0	[0..1]	[89..121]
gi\|33286240 - gi\|33286240\|gb\|AAQ01667.1\| CD81 antigen [Tupaia belangeri chinensis]	130.0	[0..1]	[89..113]
gi\|61366274, gi\|... - gi\|61366274\|gb\|AAX42838.1\| CD81 antigen [synthetic construct], gi\|54695882\|gb\|AAV38313.1\| CD81 antig...	129.0	[0..1]	[89..113]
gi\|109104994 - gi\|109104994\|ref\|XP_001093228.1\| PREDICTED: CD81 molecule [Macaca mulatta] CD81_CHLAE - CD81 antigen OS=Chlorocebus aethiops GN=CD81 PE=2 SV=1	129.0	[0..1]	[89..113]
CD81 - CD81 molecule CD81_PANTR - CD81 antigen OS=Pan troglodytes GN=CD81 PE=2 SV=1 gi\|123981866, gi... - gi\|61356417\|gb\|AAX41243.1\| CD81 antigen [synthetic construct], gi\|61356406\|gb\|AAX41242.1\| CD81 antig...	129.0	[0..1]	[89..113]
gi\|11141541 - gi\|11141541\|gb\|AAG31990.1\| CD81 [Saguinus oedipus]	129.0	[0..1]	[89..100]
CD81_BOVIN - CD81 antigen OS=Bos taurus GN=CD81 PE=2 SV=1	124.0	[0..1]	[89..113]
gi\|74201839 - gi\|74201839\|dbj\|BAE22950.1\| unnamed protein product [Mus musculus]	121.0	[0..1]	[89..113]

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Predicted Domain #1

Region A:
Residues: [1-90]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FVNKDQIAKD VKQFYDQALQ QAVVDDDANN AKAVVKTFHE TLDCCGSSTL TALTTSVLKN  60
   61 NLCPSGSNII SNLFKEDCHQ KIDDLFSGKH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	27.522879
Match:	1g8qA
Description:	CD81 extracellular domain
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits