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View Structure Prediction Details

Protein: l(3)82Fd-PO
Organism: Drosophila melanogaster
Length: 1025 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for l(3)82Fd-PO.

Description E-value Query
Range
Subject
Range
l(3)82Fd-PG - The gene l(3)82Fd is referred to in FlyBase by the symbol Dmel\l(3)82Fd (CG32464, FBgn0013576). It i...
579.0 [0..1] [1025..1]

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Predicted Domain #1
Region A:
Residues: [1-132]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQNVILTSQY YWSRRASQDV SSLSRSVDNL AIPVRRSKSR SVDHGLAAPF DLDSLRSKVE  60
   61 QRFESVDKLS RQKSSLPTIP TISYTVGNRD TLTSVAARFD TTPSELTHLN RLNSSFIYPG 120
  121 QQLLVPDKSA KD

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 3.35
Match: 2djpA
Description: No description for 2djpA was found.

Predicted Domain #2
Region A:
Residues: [133-342]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DASSSSTHDA DGASLSGKSS PVERKLSGDE SREKDILEGL RPGSPKPGHI ERVGGSSQQQ  60
   61 QAEEEANKSD DPVITQRFLK INVRHITDGQ GVVGGVLLVT PNAVMFDPNV SDPLVIEHGP 120
  121 ESYGVIAPME LVVNAAIFHD IAHMRVAGGA GQGLNSASGD AEKPEIYYPK PVLVEEDSKE 180
  181 LPEQQSLLGE DGNKRLDAEI GSLEIADDQE 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [343-623]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SLCSSTGRDG DAFPKAFDRE RVEDSSMEAK DSAKTDALDD EDKKAGLGLS STRSTLEERR  60
   61 KSLLDHHWAI PSKDRSSEDE GDNESNVTVD SGARVQDPHS ANSSVSGVPL SQPPVAAAAA 120
  121 AAAVAPASAV VPLPPSGIDL EHLEQLSKQS CYDSGIDIRE PVPNVQPIPK KTVYSDADIV 180
  181 LSSDWVPPKT IVPTHFSESP PRSTILGQSL DAGTGGAGGV RKKTSSVSFS VDDEAAQQAQ 240
  241 AQSAALAVTD KQADKKNKML KRLSYPLTWV EGLTGEGGAV P

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [624-855]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PGGVGSGSLN KSGDTDSAPN TGDSNQSVFS KVFSRRSSIG TFIRPHSSEG TSSSTKLKEA  60
   61 KQAPKLDYRS MVSMDDKPEL FISVDKLIPR PARACLDPPL YLRLRMGKPI GKAIPLPTSV 120
  121 MSYGKNKLRA EYWFSVPKNR VDELYRFINT WVKHLYGELD EEQIKARGFE LIQEDTEWTK 180
  181 SGTTKAGMGG GSQDGEEISD LTRESWEVLS MSTDEYRKTS LFATGSFDLD FP

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [856-1025]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IPDLIGKTEI LTEEHREKLC SHLPARAEGY SWSLIFSTSQ HGFALNSLYR KMARLESPVL  60
   61 IVIEDTEHNV FGALTSCSLH VSDHFYGTGE SLLYKFNPSF KVFHWTGENM YFIKGNMESL 120
  121 SIGAGDGRFG LWLDGDLNQG RSQQCSTYGN EPLAPQEDFV IKTLECWAFV 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle