YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|79396622, gi\|...
Organism:	Arabidopsis thaliana
Length:	481 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|79396622, gi|....

Description	E-value	Query Range	Subject Range
gi\|73947291 - gi\|73947291\|ref\|XP_541354.2\| PREDICTED: similar to Zinc finger protein 606 (Zinc finger protein 328)...	469.0	[0..100]	[470..2530]
gi\|109125970 - gi\|109125970\|ref\|XP_001115785.1\| PREDICTED: similar to zinc finger protein 665 [Macaca mulatta]	411.0	[0..103]	[477..335]
gi\|76620961 - gi\|76620961\|ref\|XP_589359.2\| PREDICTED: similar to zinc finger protein 354B [Bos taurus]	411.0	[0..102]	[468..342]
gi\|2224593 - gi\|2224593\|dbj\|BAA20784.1\| KIAA0326 [Homo sapiens]	409.0	[0..2]	[464..87]
gi\|114626840 - gi\|114626840\|ref\|XP_528435.2\| PREDICTED: zinc finger protein 79 (pT7) [Pan troglodytes]	403.0	[0..150]	[468..372]

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Predicted Domain #1

Region A:
Residues: [1-88]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEDHQNHPQY GIEQPSSQFS SDLFGFNLVS APDQHHRLHF TDHEISLLPR GIQGLTVAGN  60
   61 NSNTITTIQS GGCVGGFSGF TDGGGTGR

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [89-177]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 WPRQETLMLL EVRSRLDHKF KEANQKGPLW DEVSRIMSEE HGYTRSGKKC REKFENLYKY  60
   61 YKKTKEGKSG RRQDGKNYRF FRQLEAIYG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	6.0
Match:	2jmwA
Description:	No description for 2jmwA was found.

Predicted Domain #3

Region A:
Residues: [178-247]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ESKDSVSCYN NTQFIMTNAL HSNFRASNIH NIVPHHQNPL MTNTNTQSQS LSISNNFNSS  60
   61 SDLDLTSSSE

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [248-481]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GNETTKREGM HWKEKIKEFI GVHMERLIEK QDFWLEKLMK IVEDKEHQRM LREEEWRRIE  60
   61 AERIDKERSF WTKERERIEA RDVAVINALQ YLTGRALIRP DSSSPTERIN GNGSDKMMAD 120
  121 NEFADEGNKG KMDKKQMNKK RKEKWSSHGG NHPRTKENMM IYNNQETKIN DFCRDDDQCH 180
  181 HEGYSPSNSK NAGTPSCSNA MAASTKCFPL LEGEGDQNLW EGYGLKQRKE NNHQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	49.0
Match:	2i13A
Description:	No description for 2i13A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.2	NCBI nr	03/2009
PSI-BLAST	2.2.22	FFAS	ffas03
PDB	10/2008	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits