YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|79396622, gi\|...
Organism:	Arabidopsis thaliana
Length:	481 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|79396622, gi|....

Description	E-value	Query Range	Subject Range
gi\|73947291 - gi\|73947291\|ref\|XP_541354.2\| PREDICTED: similar to Zinc finger protein 606 (Zinc finger protein 328)...	469.0	[0..100]	[470..2530]
gi\|109125970 - gi\|109125970\|ref\|XP_001115785.1\| PREDICTED: similar to zinc finger protein 665 [Macaca mulatta]	411.0	[0..103]	[477..335]
gi\|76620961 - gi\|76620961\|ref\|XP_589359.2\| PREDICTED: similar to zinc finger protein 354B [Bos taurus]	411.0	[0..102]	[468..342]
gi\|2224593 - gi\|2224593\|dbj\|BAA20784.1\| KIAA0326 [Homo sapiens]	409.0	[0..2]	[464..87]
gi\|114626840 - gi\|114626840\|ref\|XP_528435.2\| PREDICTED: zinc finger protein 79 (pT7) [Pan troglodytes]	403.0	[0..150]	[468..372]

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Predicted Domain #1

Region A:
Residues: [1-88]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEDHQNHPQY GIEQPSSQFS SDLFGFNLVS APDQHHRLHF TDHEISLLPR GIQGLTVAGN  60
   61 NSNTITTIQS GGCVGGFSGF TDGGGTGR

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [89-177]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 WPRQETLMLL EVRSRLDHKF KEANQKGPLW DEVSRIMSEE HGYTRSGKKC REKFENLYKY  60
   61 YKKTKEGKSG RRQDGKNYRF FRQLEAIYG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	6.0
Match:	2jmwA
Description:	No description for 2jmwA was found.

Predicted Domain #3

Region A:
Residues: [178-247]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ESKDSVSCYN NTQFIMTNAL HSNFRASNIH NIVPHHQNPL MTNTNTQSQS LSISNNFNSS  60
   61 SDLDLTSSSE

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [248-481]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GNETTKREGM HWKEKIKEFI GVHMERLIEK QDFWLEKLMK IVEDKEHQRM LREEEWRRIE  60
   61 AERIDKERSF WTKERERIEA RDVAVINALQ YLTGRALIRP DSSSPTERIN GNGSDKMMAD 120
  121 NEFADEGNKG KMDKKQMNKK RKEKWSSHGG NHPRTKENMM IYNNQETKIN DFCRDDDQCH 180
  181 HEGYSPSNSK NAGTPSCSNA MAASTKCFPL LEGEGDQNLW EGYGLKQRKE NNHQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	49.0
Match:	2i13A
Description:	No description for 2i13A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.2	NCBI nr	03/2009
PSI-BLAST	2.2.22	FFAS	ffas03
PDB	10/2008	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits